PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47868.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 232aa MW: 26378 Da PI: 7.4346

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47868.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.3	2.9e-18	41	128	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k++ + +++++ l++p++f+e++ g +tl +s ++W+v+l +++ + +++++GWk Fv ++g++ D++vF+++++++f v vf Dca47868.1 41 FCKIM--PRNFENQ-LRIPRHFVENFLGR--LLGSVTLIGPSRNEWTVQL--ERREEDVWFSSGWKPFVIDHGIDLHDVLVFTYVDDTTF--EVVVF 128 67777..6666665.******888444..3337***********..******************************998888..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.225	38	131	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.8E-22	39	133	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.54E-19	39	129	No hit	No description
SMART	SM01019	3.5E-18	41	131	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-22	41	133	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-15	41	128	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MLHTSQTSSS TVRTEMAGVC RTCKAKAKCE YWHKLPVTKK FCKIMPRNFE NQLRIPRHFV 60 ENFLGRLLGS VTLIGPSRNE WTVQLERREE DVWFSSGWKP FVIDHGIDLH DVLVFTYVDD 120 TTFEVVVFSA MGCERESSHF TCVNSENALC SCTLHVEGNA SPVMEDVGSD FELGETEVNF 180 PQASAKESRK TKAEASHNNA VYKGKRKLVS LPRSDQFVES DNCKHKFCIC KI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846843.1	1e-35	B3 domain-containing protein Os01g0723500-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	1e-15	B3 family protein