PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47870.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 208aa    MW: 24100.9 Da    PI: 4.7124
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47870.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-131051771688
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 l++p k a ++++ k ++++l++e  ++  W v + ++ +s++  + +++ W +Fv +n+L+egD +vF+++++ 
  Dca47870.1 105 LTIPQKWAVQNMSRKDREVELRVEG-TNDFWLVGC-WWTRSRAvqCQFRARWAKFVLDNNLEEGDACVFEMIQKG 177
                 89*********98887877777666.567899999.7666666689999*********************98753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.007395195IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-13100193IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-13103193IPR015300DNA-binding pseudobarrel domain
CDDcd100179.45E-11105193No hitNo description
PROSITE profilePS508638.586105195IPR003340B3 DNA binding domain
PfamPF023622.1E-10105178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNLSFLFVKR DEDEEKEEEE EGAEGSFSCS RHPVNFPQAS AKESRKTKAE ASHNNAVYKG  60
KRKLVSLPRS DQFVESDNDF EDEDEEKEEE EEGATGKQTQ TGLYLTIPQK WAVQNMSRKD  120
REVELRVEGT NDFWLVGCWW TRSRAVQCQF RARWAKFVLD NNLEEGDACV FEMIQKGNAQ  180
AQTRPVFLVQ IFRVVQEVVP LTPKRMVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846843.13e-33B3 domain-containing protein Os01g0723500-like
TrEMBLA0A0K9QLP13e-32A0A0K9QLP1_SPIOL; Uncharacterized protein
STRINGXP_010691310.11e-27(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-11B3 family protein