PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47961.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 283aa    MW: 31725.1 Da    PI: 9.3244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47961.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-11557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT+eE++ l ++v+++G g Wk I +          R+  ++k++w++++
       Dca47961.1  5 KQKWTAEEEQALREGVHKYGAGKWKFIHSDPVfgnvlHSRSNIDLKDKWRNLR 57
                     79****************************9999***9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.422161IPR017930Myb domain
SuperFamilySSF466894.52E-16258IPR009057Homeodomain-like
SMARTSM007172.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-14556IPR009057Homeodomain-like
PfamPF002499.4E-9557IPR001005SANT/Myb domain
CDDcd116606.13E-20657No hitNo description
SMARTSM005267.8E-696187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150415.813122192IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-11122201IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.2E-8125196IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.5E-5128185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGNPKQKWTA EEEQALREGV HKYGAGKWKF IHSDPVFGNV LHSRSNIDLK DKWRNLRAAS  60
EGTGTRSRTP KPKLTEDAPV GLAPSTNVAA PVVIPVAPKP VTNPVKEEHV KETPDAKNVS  120
RSSNDMVGMI FEALSASTEQ NGLDIGSIVN YIEQRITDEL PQNFRKQLGA RLRRLVLHER  180
LEKVENCYRL KKNSLAETNA VVRKDFPRQP LIPAQVRINE SLQEAAKTAA YKVAEAEEKT  240
HLAALSVREA ERFVKMQEES DAVLQLAQEI FDRLHNNEAL LIT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696540.11e-101PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A2P2L4C75e-77A0A2P2L4C7_RHIMU; Uncharacterized protein
STRINGXP_010696540.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-33MYB_related family protein