PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48010.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 244aa    MW: 28334 Da    PI: 9.1267
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48010.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.4e-34331252103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y +++d ++++++sw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++ +         weF+++ F+k+k+ell  i+
    Dca48010.1  33 FLFKTYMLVDDTSTDDMVSWTEDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTMR---------WEFQNDMFRKNKQELLVGIR 120
                   99***************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Dca48010.1 121 RRKTS 125
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-3526116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.73E-3229122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5129122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-183356IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2933122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRELSIKGLF DDHDDDDECG IIMRRKMTKP APFLFKTYML VDDTSTDDMV SWTEDGTAFV  60
VWQPAEFARD LLPTLFKHSN FSSFVRQLNT YGFRKVTTMR WEFQNDMFRK NKQELLVGIR  120
RRKTSRNSRR SLAATANLHT GSDIRSSSTT SSSSELNYLI DENKKLKKEN GVLCSELNAM  180
KRKCQELFRL VALFGNEVDE DGDSDGDDGN NKNRPKLFGV RLDLQDESER KRRKKLALDY  240
TRTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-21301225106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-21301225106HEAT-SHOCK TRANSCRIPTION FACTOR
2ldu_A6e-213012518123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235ERKRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724147.19e-79heat stress transcription factor B-3-like
SwissprotO222305e-60HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2N9IBC92e-76A0A2N9IBC9_FAGSY; Uncharacterized protein
TrEMBLB9SU435e-76B9SU43_RICCO; Heat shock factor protein, putative
STRINGXP_010672866.17e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-53heat shock transcription factor B3