PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca48048.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 558aa MW: 63634.1 Da PI: 7.3665

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca48048.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	70	152	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 A+++GF ++ks++k + g+ + C + gk + k+ ++++++++++++++C k+k+ +g++ v+ HnH ++ Dca48048.1 70 AHSLGFGLCKSSNKPR---GTREYHLIECDRGGKYKGPFKDplKVQKKKKTTSKKIECPFKIKIVSGANGEFAVKPTYGFHNHVFM 152 899******98887...555688899***9998888999************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-5	70	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-25	254	348	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MSFTDDDDYN DGDYEVDDGD YEVDDQSALG DDNISVDALL GDGIDYSIHF LNTLSFINVA 60 SVYTWAQLIA HSLGFGLCKS SNKPRGTREY HLIECDRGGK YKGPFKDPLK VQKKKKTTSK 120 KIECPFKIKI VSGANGEFAV KPTYGFHNHV FMKHFDGHRQ MTSFSDKQKD YVRVNVVSGI 180 KTANIRLGFK EKYPDQPQPN KRQFYSVVAK VRLEEMSGRT HIYFYDTNDV DETLSRVFMV 240 HPVAHNLFKA YHYVIGIDST YKTNSYDYAV VEIVGVTPVG KSFLIAWAMM SNEKTESYVS 300 VLEMLRQVLG PNVNPTAFVT DRELSLMAAL STIFPTISHS LCVWHINTAV ENKATKLFKD 360 DNWGQRYVEK KCRKLVNSPT EEAYRFNWNR LKGESNPLMV QFLSETWIPS DIRFVKCFTN 420 KVLHFGIATT SRVESAHDIK SPTSGPLSSE TLTLQSSVFF LPVFTTDDVL EEDETPLTDF 480 PPCPRFEGIL ITPSSISSST TSTHLHPPNY PFRRLRQHLP QHHLPPPPPQ YLHQNYGRTL 540 FDIAEHIRDL KTRPSCRL

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MSFTDDDDYN DGDYEVDDGD YEVDDQSALG DDNISVDALL GDGIDYSIHF LNTLSFINVA  60
SVYTWAQLIA HSLGFGLCKS SNKPRGTREY HLIECDRGGK YKGPFKDPLK VQKKKKTTSK  120
KIECPFKIKI VSGANGEFAV KPTYGFHNHV FMKHFDGHRQ MTSFSDKQKD YVRVNVVSGI  180
KTANIRLGFK EKYPDQPQPN KRQFYSVVAK VRLEEMSGRT HIYFYDTNDV DETLSRVFMV  240
HPVAHNLFKA YHYVIGIDST YKTNSYDYAV VEIVGVTPVG KSFLIAWAMM SNEKTESYVS  300
VLEMLRQVLG PNVNPTAFVT DRELSLMAAL STIFPTISHS LCVWHINTAV ENKATKLFKD  360
DNWGQRYVEK KCRKLVNSPT EEAYRFNWNR LKGESNPLMV QFLSETWIPS DIRFVKCFTN  420
KVLHFGIATT SRVESAHDIK SPTSGPLSSE TLTLQSSVFF LPVFTTDDVL EEDETPLTDF  480
PPCPRFEGIL ITPSSISSST TSTHLHPPNY PFRRLRQHLP QHHLPPPPPQ YLHQNYGRTL  540
FDIAEHIRDL KTRPSCRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-12	far-red elongated hypocotyls 3