PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48071.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 632aa    MW: 67793.2 Da    PI: 7.1257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48071.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16427473455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Dca48071.1 427 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 473
                 5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-20420481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-17426477No hitNo description
PfamPF000101.1E-13427473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-20427496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MPLAELLRMI SGKVDDSNQE RASNSSDPSS RPEADFCELV WENGHLMMQG QSSKNGNQSH  60
KSQDGRDANR LKMNNFSTMD SLLGDFPSVV PSSDMGLGQD GDMVPWLSFP DAYTCEFMPE  120
LSGVTLNNIS TDNHLAHREK KSGSYGDGHR NSMSLKHCDA SKVDSKTVKC GKGQNSEVPQ  180
FALSSQNNVL RSGVSGVTGE NAGNTHNVAS RDFNSSSLCA FTGTRLQKLD AGQPSTSSSF  240
ANFPYFSRSA ALAKANHLSE NASQRLGNNQ QRCTVPSSNP TDSMLVNLAS ACSRKELGIQ  300
NPSVQAPVSE NPELVKKQTD ELITAKTVNH REDVVKDTQQ NHALDATMSK VGAIGEGNVV  360
PAVAASSVCS GNSVDKASNE RGNDLKRKLR ENTESEGPSE EVDDESVGAK KAAHARVSSK  420
RIRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK TLQLQVQMFT  480
MGAGMYMQPM MLPPGMQPIH GAQIPHFSPM GLGIGMGMGM GYGMNMLDVN GGMKMMPFQS  540
PHYPVPGAAA SFHGMLGSSL QPFGHPSQGF QMPIPRTSVH PIPAPPPANI LPIGLNASGV  600
AGSSGACNVA PPCLQAIPGN SPNIFMNQAI NQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772526.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-35phytochrome interacting factor 3