PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca48297.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 463aa MW: 50323.2 Da PI: 9.4254

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca48297.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.2e-31	397	454	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Dca48297.1 397 DEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEEPTMLIVTYEGEHNHP 454 99**********************988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.2E-18	348	393	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.6E-33	383	455	IPR003657	WRKY domain
PROSITE profile	PS50811	29.654	390	456	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	393	454	IPR003657	WRKY domain
SMART	SM00774	7.8E-38	395	455	IPR003657	WRKY domain
Pfam	PF03106	2.5E-26	397	454	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MEGIEEANKS AIETCYRFLS KFGKPQESQS ENGVLAAETE KVVSEFKKVV SNLGYGVGHA 60 RARIVKQGIV VSEKRDEAKK VEPKEGGFQG FQLFKTDLNE SATRENGSGS SSNGKNCLGL 120 EDLGLQLSSS GGKPQRFKNG VNEEGCVREN GSLDGLSLEL NSSNGKPSHC KAKLNEGCGL 180 ENGSVSGKSC LSLGNLGLEL SSSGVKNGSV HENGSTTGKS CLSLGNVPMD PSSSTGQALV 240 QLGHRHPNSN AHHHFLQQQQ QQQQQQMRQS FQLHQQQQMK HRAEMMYRRS NSGISLNFDN 300 PSCTPTLSSN RSFMSSLSVD GSLANLSANG FNLISGSHVS DQNSSQLKKR CSGREEDGSL 360 KCGRSGKCHC SKKRKNRVKR SIKVPAISNK LADIPPDEFS WRKYGQKPIK GSPHPRGYYK 420 CSSVRGCPAR KHVERCLEEP TMLIVTYEGE HNHPNIPSQS ANT

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MEGIEEANKS AIETCYRFLS KFGKPQESQS ENGVLAAETE KVVSEFKKVV SNLGYGVGHA  60
RARIVKQGIV VSEKRDEAKK VEPKEGGFQG FQLFKTDLNE SATRENGSGS SSNGKNCLGL  120
EDLGLQLSSS GGKPQRFKNG VNEEGCVREN GSLDGLSLEL NSSNGKPSHC KAKLNEGCGL  180
ENGSVSGKSC LSLGNLGLEL SSSGVKNGSV HENGSTTGKS CLSLGNVPMD PSSSTGQALV  240
QLGHRHPNSN AHHHFLQQQQ QQQQQQMRQS FQLHQQQQMK HRAEMMYRRS NSGISLNFDN  300
PSCTPTLSSN RSFMSSLSVD GSLANLSANG FNLISGSHVS DQNSSQLKKR CSGREEDGSL  360
KCGRSGKCHC SKKRKNRVKR SIKVPAISNK LADIPPDEFS WRKYGQKPIK GSPHPRGYYK  420
CSSVRGCPAR KHVERCLEEP TMLIVTYEGE HNHPNIPSQS ANT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	388	457	7	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021764294.1	1e-117	probable WRKY transcription factor 21
TrEMBL	V7BGP8	1e-111	V7BGP8_PHAVU; Uncharacterized protein
STRING	XP_010679182.1	1e-116	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	6e-80	WRKY DNA-binding protein 21