PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca48519.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 999aa MW: 111636 Da PI: 7.0089

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca48519.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.4	8.8e-09	160	214	22	76
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e+ +s s+ Dca48519.1 160 ARGKTRAEKDREVAEYLARHGVSRDAKTAGTKWDNMLGEFRKVYEWERYPSSSSV 214 3567999999*************************************98655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.25E-14	748	987	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.6E-8	829	984	No hit	No description
CDD	cd00180	1.01E-8	834	980	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MSDQKDEENT SPQNTQHITH NQQQQQQQQQ QQQLLFHTTN PPTISTTTTT TTFSPFNFES 60 SSKKPRYTTT WKPQPSLVPG PGPGPIPAHS SPPPGASPET PSSSSAPHHA AGSAAAASRL 120 RKGKFVSPVW RPDEMLCLAR AWRAQYEGPG PGPGGPGGPA RGKTRAEKDR EVAEYLARHG 180 VSRDAKTAGT KWDNMLGEFR KVYEWERYPS SSSVDRWGPH GQQAAGNKSY FRLSPYERKI 240 HRLPASFDEQ VFEELSQFMG PRMRPTSSCG IITTITNTSS VGTASFLQFQ QGLLRSSSSG 300 GSSGGGSFEY GGKAMLPPSS YYPSSIPSFI RDDEHPLSSL LSARTRTMEE YTTRINPRSN 360 PLLGYDQYQH QHQHQSPHLD YGPTLGGSRV EMMRRVGRIR MSWEESVSLW GPDDTAGDSS 420 NSRGRVKLYG GGGGSMMLFN ADELVYFDES MVASTLEFFE EGPLKGFSVD SFVPGQLLKV 480 FGRRKHSSSS STSSGELFQD PTDYYLGCLR TLPGTLPSLI ELPWYIQELT PEEFRIPLRK 540 DIYRDLPQGR ELFFTASSSE PPLLDSKSFT LDILSSLIRS NPSISASTST SRDSYIGLWD 600 DCINRVVSKF CPIEMVFIRK QNNKAKPSSE TVLDEWPNLT GMVNKLCLWR GEEVDRVRED 660 DDPSNSITRN LLWTYGDLPY VLGYYAIGYN VTFCALSPSQ NKSEIIRTDL YSIDLSDPSD 720 RLKSIIPCWR IGILLATLAS RCSKSCQSDY YRQEIMGDDS NGNVIIEMTP NTVTKCYPSK 780 KKWQKVKEIY DMLDQNIPHV EHVICHNEID LSLVFKPRGV KIRPKNCNQL VLALKQVTKS 840 LVALHDLSFM HRDLSWDKVM LLLSQSKDED EGQDEEEDKE WFVTGFEEAV RAPRINPSRL 900 AKTDEEKGGA SGRHAPEMAR GVYGVKVDVW GIGYLVKTSG VQVSKSEESV VGKKLKEFEM 960 RCMEQNPEMR PTAADCYHHL LQIQASLSFS SSSASPACI

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MSDQKDEENT SPQNTQHITH NQQQQQQQQQ QQQLLFHTTN PPTISTTTTT TTFSPFNFES  60
SSKKPRYTTT WKPQPSLVPG PGPGPIPAHS SPPPGASPET PSSSSAPHHA AGSAAAASRL  120
RKGKFVSPVW RPDEMLCLAR AWRAQYEGPG PGPGGPGGPA RGKTRAEKDR EVAEYLARHG  180
VSRDAKTAGT KWDNMLGEFR KVYEWERYPS SSSVDRWGPH GQQAAGNKSY FRLSPYERKI  240
HRLPASFDEQ VFEELSQFMG PRMRPTSSCG IITTITNTSS VGTASFLQFQ QGLLRSSSSG  300
GSSGGGSFEY GGKAMLPPSS YYPSSIPSFI RDDEHPLSSL LSARTRTMEE YTTRINPRSN  360
PLLGYDQYQH QHQHQSPHLD YGPTLGGSRV EMMRRVGRIR MSWEESVSLW GPDDTAGDSS  420
NSRGRVKLYG GGGGSMMLFN ADELVYFDES MVASTLEFFE EGPLKGFSVD SFVPGQLLKV  480
FGRRKHSSSS STSSGELFQD PTDYYLGCLR TLPGTLPSLI ELPWYIQELT PEEFRIPLRK  540
DIYRDLPQGR ELFFTASSSE PPLLDSKSFT LDILSSLIRS NPSISASTST SRDSYIGLWD  600
DCINRVVSKF CPIEMVFIRK QNNKAKPSSE TVLDEWPNLT GMVNKLCLWR GEEVDRVRED  660
DDPSNSITRN LLWTYGDLPY VLGYYAIGYN VTFCALSPSQ NKSEIIRTDL YSIDLSDPSD  720
RLKSIIPCWR IGILLATLAS RCSKSCQSDY YRQEIMGDDS NGNVIIEMTP NTVTKCYPSK  780
KKWQKVKEIY DMLDQNIPHV EHVICHNEID LSLVFKPRGV KIRPKNCNQL VLALKQVTKS  840
LVALHDLSFM HRDLSWDKVM LLLSQSKDED EGQDEEEDKE WFVTGFEEAV RAPRINPSRL  900
AKTDEEKGGA SGRHAPEMAR GVYGVKVDVW GIGYLVKTSG VQVSKSEESV VGKKLKEFEM  960
RCMEQNPEMR PTAADCYHHL LQIQASLSFS SSSASPACI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019107973.1	0.0	PREDICTED: uncharacterized protein LOC104906574
TrEMBL	A0A0J8BFY7	0.0	A0A0J8BFY7_BETVU; Uncharacterized protein
STRING	XP_010693644.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-07	Trihelix family protein