PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48540.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 150aa    MW: 17057.7 Da    PI: 7.0737
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48540.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.14.5e-1998146251
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  +++Wt  LH++Fvea+  + G+++A+Pk+i+e m+ +++++e+++SHLQ
  Dca48540.1  98 RKMHWTAPLHDKFVEAIFVI-GEDRAVPKKIMEYMNEPSISRENIASHLQ 146
                 689*****************.***************************** PP
2Response_reg21.31.3e-083642585
                  EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
  Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85
                  +v +a+++ +a++ l+ ++  +D++l D++   m+Gl + k i+ee  ++p++ + + ++ + 
    Dca48540.1  3 SVVTASSPIDAIAALRVNHasYDMVLSDMQFTSMHGLFFQKMIEEEF-RIPVVSIVDPNATNS 64
                  688999*********999999**********************9999.888888876555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-6356IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-6379No hitNo description
SuperFamilySSF466892.69E-1394147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1696146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-1998149IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MLSVVTASSP IDAIAALRVN HASYDMVLSD MQFTSMHGLF FQKMIEEEFR IPVVSIVDPN  60
ATNSVANQIQ ESTNNVECKE IVVADEGKKK AKRTYKRRKM HWTAPLHDKF VEAIFVIGED  120
RAVPKKIMEY MNEPSISREN IASHLQVTYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-13response regulator 14