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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dca48543.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 717aa MW: 80368.2 Da PI: 5.7202 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 64.3 | 1.8e-20 | 38 | 91 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++t++q++eLe+ F+++ +p+ ++r+e++k+lgL rqVk+WFqNrR+++k
Dca48543.1 38 HQHRHTPYQIKELENIFKNCAHPDLKQRREISKRLGLASRQVKFWFQNRRTQMK 91
66789**********************************************999 PP
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| 2 | START | 133 | 3.4e-42 | 233 | 453 | 5 | 206 |
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88
+a++el+++a+ e+ +Wv s e +n++e+ +kf+ + +a r++ v+ ++ +lve+++ + +W+ ++ ka+t+ev+ +g
Dca48543.1 233 AAMEELLAMADIESSLWVNSFeegrELLNYEEYSKKFSAFSGvrpnnLVNDATRVVSSVFITSSQLVEQMMIPR-KWKDLFPcfvsKAATIEVLFNGsn 330
799*****************9999999**********6654499999999*********************999.************************ PP
....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
START 89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
g+lqlm+ae +++sp p R f+R+ +q+ +g w++vdvS++ ++ + sss+ + ++lpSg+++++++ng+s vtw+eh +++++ +h l++
Dca48543.1 331 gtrdGELQLMNAEIVFPSPFIPvRQEKFLRFAKQHAEGMWAVVDVSLEMIRESSYSSSFDKWRKLPSGFIVQDVPNGYSLVTWIEHGEYDENYVHPLYQ 429
****************************************************999******************************************** PP
HHHHHHHHHHHHHHHHHTXXXXXX CS
START 183 slvksglaegaktwvatlqrqcek 206
+l++sgla ga++w++tlqr ce+
Dca48543.1 430 PLLRSGLAYGAQRWLSTLQRECES 453
**********************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 1.54E-18 | 26 | 93 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 31 | 98 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 16.115 | 33 | 93 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 2.1E-16 | 34 | 97 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 2.86E-17 | 37 | 93 | No hit | No description |
| Pfam | PF00046 | 9.3E-18 | 38 | 91 | IPR001356 | Homeobox domain |
| PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
| PROSITE profile | PS50848 | 37.884 | 220 | 456 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 5.59E-21 | 223 | 453 | No hit | No description |
| CDD | cd08875 | 1.39E-88 | 224 | 452 | No hit | No description |
| SMART | SM00234 | 4.0E-28 | 229 | 453 | IPR002913 | START domain |
| Pfam | PF01852 | 9.1E-35 | 233 | 453 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 2.11E-13 | 474 | 650 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 717 aa Download sequence Send to blast |
MEKNDDFEDY FDSDGEINFD NFTFDIYGEG TSHGRGKHQH RHTPYQIKEL ENIFKNCAHP 60 DLKQRREISK RLGLASRQVK FWFQNRRTQM KTQLERNENV SLKQEYDRLC DEHKALKELV 120 RNPICQKCGG PAMLGENARL KDELIRVSDL AERALGRPVS NLAAQIKSTT VNSRLAQPVW 180 RNGSNDQMGA PNQIPPLRFV NFENGSSSNT SPLNGLILTS NLEKTTFMQA GIAAMEELLA 240 MADIESSLWV NSFEEGRELL NYEEYSKKFS AFSGVRPNNL VNDATRVVSS VFITSSQLVE 300 QMMIPRKWKD LFPCFVSKAA TIEVLFNGSN GTRDGELQLM NAEIVFPSPF IPVRQEKFLR 360 FAKQHAEGMW AVVDVSLEMI RESSYSSSFD KWRKLPSGFI VQDVPNGYSL VTWIEHGEYD 420 ENYVHPLYQP LLRSGLAYGA QRWLSTLQRE CESAAILTSS RYLVEDTEGG SITSEGKWSV 480 IKLMKRISHN LCAALCTSTD RRWEKMKIEG VSTDVSIVSR ISFSEPGEPY GLVLSASTSV 540 WLPVSRQHLF DFLRNEKFRA KWDILSNGGP MEVLSCISMS FDGTNLVSLL CPPAAPARDS 600 SMVIIQQSWS DPTGSFIVYA PVDSSSLDPI LKGADSDYLV LLPSGFAISD GPIHPCVPVL 660 TSSSDPEFGG TSVLTMGFQI LVNSLPATKD LTVESIETIR NLMSGTIQKI RASLTID |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019107937.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG1 isoform X1 | ||||
| TrEMBL | A0A0K9RDL3 | 0.0 | A0A0K9RDL3_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010693469.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00730.1 | 0.0 | HD-ZIP family protein | ||||




