PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48543.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 717aa    MW: 80368.2 Da    PI: 5.7202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48543.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-203891356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                + +++t++q++eLe+ F+++ +p+ ++r+e++k+lgL  rqVk+WFqNrR+++k
  Dca48543.1 38 HQHRHTPYQIKELENIFKNCAHPDLKQRREISKRLGLASRQVKFWFQNRRTQMK 91
                66789**********************************************999 PP

2START1333.4e-422334535206
                 HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
       START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                 +a++el+++a+ e+ +Wv s     e +n++e+ +kf+   +        +a r++  v+ ++ +lve+++  + +W+  ++    ka+t+ev+ +g  
  Dca48543.1 233 AAMEELLAMADIESSLWVNSFeegrELLNYEEYSKKFSAFSGvrpnnLVNDATRVVSSVFITSSQLVEQMMIPR-KWKDLFPcfvsKAATIEVLFNGsn 330
                 799*****************9999999**********6654499999999*********************999.************************ PP

                 ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
       START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     g+lqlm+ae +++sp  p R   f+R+ +q+ +g w++vdvS++  ++ + sss+ + ++lpSg+++++++ng+s vtw+eh +++++ +h l++
  Dca48543.1 331 gtrdGELQLMNAEIVFPSPFIPvRQEKFLRFAKQHAEGMWAVVDVSLEMIRESSYSSSFDKWRKLPSGFIVQDVPNGYSLVTWIEHGEYDENYVHPLYQ 429
                 ****************************************************999******************************************** PP

                 HHHHHHHHHHHHHHHHHTXXXXXX CS
       START 183 slvksglaegaktwvatlqrqcek 206
                 +l++sgla ga++w++tlqr ce+
  Dca48543.1 430 PLLRSGLAYGAQRWLSTLQRECES 453
                 **********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-182693IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-203198IPR009057Homeodomain-like
PROSITE profilePS5007116.1153393IPR001356Homeobox domain
SMARTSM003892.1E-163497IPR001356Homeobox domain
CDDcd000862.86E-173793No hitNo description
PfamPF000469.3E-183891IPR001356Homeobox domain
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PROSITE profilePS5084837.884220456IPR002913START domain
SuperFamilySSF559615.59E-21223453No hitNo description
CDDcd088751.39E-88224452No hitNo description
SMARTSM002344.0E-28229453IPR002913START domain
PfamPF018529.1E-35233453IPR002913START domain
SuperFamilySSF559612.11E-13474650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MEKNDDFEDY FDSDGEINFD NFTFDIYGEG TSHGRGKHQH RHTPYQIKEL ENIFKNCAHP  60
DLKQRREISK RLGLASRQVK FWFQNRRTQM KTQLERNENV SLKQEYDRLC DEHKALKELV  120
RNPICQKCGG PAMLGENARL KDELIRVSDL AERALGRPVS NLAAQIKSTT VNSRLAQPVW  180
RNGSNDQMGA PNQIPPLRFV NFENGSSSNT SPLNGLILTS NLEKTTFMQA GIAAMEELLA  240
MADIESSLWV NSFEEGRELL NYEEYSKKFS AFSGVRPNNL VNDATRVVSS VFITSSQLVE  300
QMMIPRKWKD LFPCFVSKAA TIEVLFNGSN GTRDGELQLM NAEIVFPSPF IPVRQEKFLR  360
FAKQHAEGMW AVVDVSLEMI RESSYSSSFD KWRKLPSGFI VQDVPNGYSL VTWIEHGEYD  420
ENYVHPLYQP LLRSGLAYGA QRWLSTLQRE CESAAILTSS RYLVEDTEGG SITSEGKWSV  480
IKLMKRISHN LCAALCTSTD RRWEKMKIEG VSTDVSIVSR ISFSEPGEPY GLVLSASTSV  540
WLPVSRQHLF DFLRNEKFRA KWDILSNGGP MEVLSCISMS FDGTNLVSLL CPPAAPARDS  600
SMVIIQQSWS DPTGSFIVYA PVDSSSLDPI LKGADSDYLV LLPSGFAISD GPIHPCVPVL  660
TSSSDPEFGG TSVLTMGFQI LVNSLPATKD LTVESIETIR NLMSGTIQKI RASLTID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107937.10.0PREDICTED: homeobox-leucine zipper protein HDG1 isoform X1
TrEMBLA0A0K9RDL30.0A0A0K9RDL3_SPIOL; Uncharacterized protein
STRINGXP_010693469.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein