PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48552.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 255aa    MW: 29192.4 Da    PI: 5.3896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48552.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l d++ q+G  +W+++++  g+ R +k+c++rw +yl
       Dca48552.1 16 RGLWSPEEDQRLRDYILQHGISCWSSVPSNAGLQRNGKSCRLRWINYL 63
                     788*******************************************97 PP
2Myb_DNA-binding49.21.3e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E++ ++ ++k lG++ W+ Ia++++ gRt++++k++w++yl
       Dca48552.1  69 RGLFSSQEEDTILTLHKNLGNK-WSQIAKELP-GRTDNEIKNYWHSYL 114
                      7889******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5231163IPR017930Myb domain
SuperFamilySSF466891.65E-2714110IPR009057Homeodomain-like
SMARTSM007172.2E-101565IPR001005SANT/Myb domain
PfamPF002495.6E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-221770IPR009057Homeodomain-like
CDDcd001671.92E-91963No hitNo description
PROSITE profilePS5129424.83564118IPR017930Myb domain
SMARTSM007173.1E-1468116IPR001005SANT/Myb domain
PfamPF002492.6E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2571117IPR009057Homeodomain-like
CDDcd001672.86E-1072114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGPSKSSEKP GRKHRRGLWS PEEDQRLRDY ILQHGISCWS SVPSNAGLQR NGKSCRLRWI  60
NYLRPGLKRG LFSSQEEDTI LTLHKNLGNK WSQIAKELPG RTDNEIKNYW HSYLKKKQSK  120
SEEIETNTEP NNFTNFPCTA QNDNPSLNQT PYNVVSDIDP MQTIDQNQNQ SLLPRFLFAD  180
WLTADDQTAP PDFLQCFRYN EEGASTCVEN KFGHGEIEDE LENNMMDLPF TFLDQSTVGN  240
CLMGLSTGNV VYSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-241611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021730475.19e-94transcription factor LAF1-like
SwissprotQ9M0K41e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0J8B2S62e-85A0A0J8B2S6_BETVU; Uncharacterized protein
STRINGXP_010667575.14e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.14e-60myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]