PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4867.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 226aa    MW: 26526.8 Da    PI: 8.8397
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4867.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1293.4e-0972164790
       FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 
                A e GF ++k+++ ++ +++ e+  + f+Cs++g+++   +  +k +++  +++++C+ +++  +++   d+kw+v           +HnHel+
  Dca4867.1  72 AFENGFALVKATNGQKnRKQPEFLASYFRCSRHGRSKIVYDP-DKPKKKPRTQKCDCEFRVRAVQNYhsiDNKWVVLWNIviskgfGNHNHELT 164
                7789**999988765548999****************99888.667777778889999988866665689999988643335666699****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-671164IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDNPEFFLPV DGRPELSHLW LWTKNFIVLL WEDSPDSFED FRGDDVDYNP LFVTKVCFKD  60
RDEAFDWANN VAFENGFALV KATNGQKNRK QPEFLASYFR CSRHGRSKIV YDPDKPKKKP  120
RTQKCDCEFR VRAVQNYHSI DNKWVVLWNI VISKGFGNHN HELTKYKDGH RHYSGLDEEE  180
KAYIKQQYST SAFPRDIKTG LHQKTPSKPQ PSSKQITTRQ VSFEGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120KPKKKPR
2115121PKKKPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-