PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48700.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 312aa    MW: 34929 Da    PI: 3.8402
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48700.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM453.4e-145101295
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                 p G+rF+P+  +l++++Lk k++g++ +     + ++d+y+ +P ++ +   + +  + +e yfFs+ + k   g+r+ r +   g+W++t ++++v++
  Dca48700.1   5 PIGVRFKPSKTQLINYFLKLKLSGRPWSSWYPqFIDFDVYSDHPFNIMAltrEWRDgSMEEGYFFSPLKMK---GTRAVRcVQGYGTWSETSSSEDVYD 100
                 89************************66544448999*********9743342222245577*****9875...7899996667999**********98 PP

         NAM  95 k 95 
                 +
  Dca48700.1 101 E 101
                 4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-143102IPR003441NAC domain
PROSITE profilePS5100515.7614157IPR003441NAC domain
PfamPF023657.3E-85105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MFTIPIGVRF KPSKTQLINY FLKLKLSGRP WSSWYPQFID FDVYSDHPFN IMALTREWRD  60
GSMEEGYFFS PLKMKGTRAV RCVQGYGTWS ETSSSEDVYD ETMSFSIGIC SGSNGAVEVS  120
TVENVMPQSF TDKDYEEAML AYESLTSDDI IEMLDFDVEH DTSSEGSYGI VVDPAAARQQ  180
DVLHQAMYNN DAVDADNPTA DGFEAYAKEL EQGLMVVSDD TVVVQGDDDT GDDPNLVQES  240
YYSNDVQSVN CANQSVPQEY NQVHQHEQAT SVASGGAQDN VVVGDDNQFM SDHEFDTLWN  300
PFTGSWLQFH SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.33e-07NAC transcription factor-like 9