PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48741.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 291aa    MW: 33385.6 Da    PI: 10.3223
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48741.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.91.3e-0795176789
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 A+ +GF ++ks++k +   g+ + +  +C   gk +   ++  ++ +r+++++++++C  k+k+   +dg++ v+ +   HnHe+
  Dca48741.1  95 AHGLGFGLCKSSNKPR---GTRKYHLIKCEFGGKYKGPFTDplKVPKRKKTTSKKIECPFKIKIVSGTDGTFAVMPMYGFHNHEM 176
                 8899******998877...444566777888888777666666789*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-495176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNTLSFPNMK MAYTWAQTIA HGLGFGLCKS SNKPRGTREY HLIECEFGGK YRGPFKDPLK  60
VDQLIGDGID YSFHFMNTLC FQNMKMAYTW AQAIAHGLGF GLCKSSNKPR GTRKYHLIKC  120
EFGGKYKGPF TDPLKVPKRK KTTSKKIECP FKIKIVSGTD GTFAVMPMYG FHNHEMGKFF  180
DGHRQMTFFS DEQIDYVRVH VVSEVKTANI RLGFKKKYPD QPQPNKRQFD SVVAKVRLDE  240
MGGRTHVQQI DLSKFDSTQK TDPTRPLFLG SRPVKFDPRP EMTRTRNDPL I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-