PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48815.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 372aa    MW: 41808.1 Da    PI: 7.0576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48815.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.61.4e-2985195199
                 EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 f+k ltpsdv+k++rlv+pk++ae++              gg   ++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++
  Dca48815.1  85 FEKPLTPSDVGKLNRLVIPKQHAEKYlplaaaaaaagadsGG--GGGLLLGFEDETGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKKLDAGDVVLFERH 181
                 99***************************9999999886532..37789************************************************65 PP

                 SS.SEE..EEEEE-S CS
          B3  86 gr.sefelvvkvfrk 99 
                  r +  +++++++r+
  Dca48815.1 182 -RfEPDRFFIGWRRR 195
                 .44888889999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-3880197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2981194IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-2383184No hitNo description
PROSITE profilePS5086312.98585196IPR003340B3 DNA binding domain
PfamPF023627.7E-2785195IPR003340B3 DNA binding domain
SMARTSM010192.4E-2285196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSHFSLNLEP SNTLWYNPSH SMDQKSYPFF YHNLHNHHNQ NNHNNNYDDV DSDNSSSNAA  60
VPDRSETASS TTTTTVAALD KEHMFEKPLT PSDVGKLNRL VIPKQHAEKY LPLAAAAAAA  120
GADSGGGGGL LLGFEDETGK CWRFRYSYWN SSQSYVLTKG WSRYVKEKKL DAGDVVLFER  180
HRFEPDRFFI GWRRRGSNPP VQPSPGWTAR SFNTNNYNQN QNHGVYNNNN NHYNNYNNNN  240
SNNQQQNVVQ SQQCYITPHQ ISLFPNFPSD SLHGGTAQVR QKSKKSEGTK SKRVRLFGVN  300
LECELEETEE NRGHDDEPQT SDGGSSLSSQ GQGQGQGGFG SGSGTGPTSY NYFDYVGYPP  360
NNHHSHNHMV QY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-46801953113B3 domain-containing transcription factor NGA1
5os9_B1e-46801953113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765456.11e-116B3 domain-containing protein At2g36080-like isoform X1
TrEMBLA0A0K9RLB11e-104A0A0K9RLB1_SPIOL; Uncharacterized protein
STRINGXP_010683640.13e-90(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.21e-50B3 family protein