PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48969.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 325aa    MW: 36229.9 Da    PI: 8.1104
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48969.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-094872126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt+lC+ ++  GtC+y  +C+FaHg
  Dca48969.1 48 YKTKLCCKYRS-GTCPYVTNCNFAHG 72
                9********99.*************9 PP
2zf-CCCH18.73.2e-06135160126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk + C+ f+    C+yGd+C+F H+
  Dca48969.1 135 YKGRHCKKFYTQEGCPYGDSCTFLHD 160
                 78888******99************7 PP
3zf-CCCH41.91.6e-13205230126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tGtC++G++C+FaHg
  Dca48969.1 205 WKTRICNKWETTGTCPFGPKCHFAHG 230
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.9E-94478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-154680IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5544774IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-44773IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-74872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9131162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.077134161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16200234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10201235IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-9204231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751204232IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10205230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MESWGVTKDD AIWATEDEYT RWNKKSRLNS NSNSNSNSTS KAIGRMFYKT KLCCKYRSGT  60
CPYVTNCNFA HGLDELRNPP ENWQEIVAAH DEEQHQNHNH NNNNHNSEQQ HHLQQIPIIS  120
TTESRGESHH SQRSYKGRHC KKFYTQEGCP YGDSCTFLHD EQSRSRESVA ISVTPALAPP  180
SAVAVGVGSA SSSSVNVNSV KPSNWKTRIC NKWETTGTCP FGPKCHFAHG WPELHNFGGG  240
TTEGDCRESP AATETKTAAG MAIKTDVAPT ASLEHHHHNH HHVGGGITSQ RPSMVIKVVG  300
RRPHPKWKGP DKISRIYGDW IGDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671084.11e-125PREDICTED: zinc finger CCCH domain-containing protein 56
RefseqXP_021725855.11e-125zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ32e-98C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1S3ZU961e-113A0A1S3ZU96_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X1
TrEMBLA0A1S3ZUC51e-113A0A1S3ZUC5_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X2
STRINGXP_010671084.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-84C3H family protein