PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49200.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 304aa    MW: 34204.1 Da    PI: 5.8629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49200.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++lv+ ++ +G  +W+++++  g+ R++k+c++rw +yl
       Dca49200.1 13 RGLWSPEEDDKLVKHITTHGHVSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*****************99************************97 PP
2Myb_DNA-binding50.54.8e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+  +v++++ l ++ W+ Ia++++ gRt++++k++w++
       Dca49200.1  66 RGSFTEEEERTIVEVHRILDNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23462IPR009057Homeodomain-like
PROSITE profilePS5129416.917860IPR017930Myb domain
SuperFamilySSF466891.8E-2710107IPR009057Homeodomain-like
SMARTSM007171.1E-111262IPR001005SANT/Myb domain
PfamPF002496.1E-141360IPR001005SANT/Myb domain
CDDcd001674.22E-101660No hitNo description
PROSITE profilePS5129424.54161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2463115IPR009057Homeodomain-like
SMARTSM007173.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.4E-1466109IPR001005SANT/Myb domain
CDDcd001671.48E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DDKLVKHITT HGHVSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EEEERTIVEV HRILDNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLPQ RNRKSGSSNT NNVPKISSIS TSLAFSVDQT KTRDNKANID QMELNNIDFS  180
SQQFDAVTGF SSECFELNST KICNNNNYAS VNINPCDVVN IDENVLWDTT LGSIIEQPPE  240
IAGTSDKIGT IQGNITCDQS FETTEFDTMA FDYCFDNDYG ATTTAFDSVY GDLSSVIDQV  300
AWGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670059.11e-105PREDICTED: transcription repressor MYB6
TrEMBLA0A2N9H3N03e-88A0A2N9H3N0_FAGSY; Uncharacterized protein
STRINGXP_010670059.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-86myb domain protein 67