PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49218.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 493aa    MW: 55664.7 Da    PI: 8.1245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49218.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.14.3e-0894139454
         AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  GV  ++ +grW++++++p+    + + +lg++ t+eeAa  a+  r +++
  Dca49218.1  94 VGV--RPDNGRWRVQLWHPKL---KHNLQLGSYKTCEEAAIVAEMKRAEFH 139
                 577..6889*********943...59*****************99998876 PP
2AP241.14.5e-13185225448
         AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                 +GVr+ + +g+WvA+Irdp+      +r++lg+f t +eA +a+ +
  Dca49218.1 185 PGVRRIP-SGKWVARIRDPV----AkTRIWLGTFNTVDEALRAYNE 225
                 6******.7*********64....35******************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0742578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-52669IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-52771IPR016177DNA-binding domain
PROSITE profilePS510328.70286161IPR001471AP2/ERF domain
PROSITE profilePS5103214.75183241IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-12185230IPR016177DNA-binding domain
SMARTSM003807.5E-9186247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-15186234IPR001471AP2/ERF domain
CDDcd000181.72E-15186235No hitNo description
PROSITE profilePS510328.57369443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAEFLGGCNG EEVDTCGGVS EIKNKFVGVS KSGNKWWARV RDPKLRADVD LGRFRTPEEA  60
AVAVKKKRLE FEDMYKGESM NIRRGYFNGM KLPVGVRPDN GRWRVQLWHP KLKHNLQLGS  120
YKTCEEAAIV AEMKRAEFHD LQEPTCEGVG IVADEKRADF GESNKPVTDV ARKSSDQTGV  180
VEMPPGVRRI PSGKWVARIR DPVAKTRIWL GTFNTVDEAL RAYNEKKVLL AAAKITRVHF  240
DGSEFENMDK PHSKPDETSV KLERELEYNS PASSLVSECF NNVAPDEQSS HGHGKVHSSP  300
TSVFYARNSN SSSVSDKTHA LEFNREASLS VVNEYGQLLD EFQELDEQMW FNEEAAIVVE  360
KKRAEIREKY KGVDFRYQFE GVKLPYGVRW ENGKYRVRIR HPKLKKYKPS FGSYETCDDA  420
AAVAQMKRAE LQGLQQGPEI EGEKKSVRLN EHVGDVQVPR GAKTTKDPFD GSELESMDKP  480
GSKPDETSVK LRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-13ERF family protein