PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49317.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family S1Fa-like
Protein Properties Length: 221aa    MW: 24265 Da    PI: 11.5919
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49317.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA134.23.1e-42369470
        S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                + +eakG+nPGlivllv+ggl+l+fl+gny+lyvyaqknlPP+kkkPvskkk+k+e++kqGva+PGe
  Dca49317.1  3 NDIEAKGINPGLIVLLVIGGLVLTFLIGNYALYVYAQKNLPPKKKKPVSKKKMKKERMKQGVAPPGE 69
                679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190131.0E-4169No hitNo description
PfamPF046894.9E-38569IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
AGNDIEAKGI NPGLIVLLVI GGLVLTFLIG NYALYVYAQK NLPPKKKKPV SKKKMKKERM  60
KQGVAPPGEI KLPFRAKKVI ATGSRRRNAS HEKAAAANID IYSRSNHQHG PGYPSIVRRD  120
DWRIKLPFRA RVIATGSRRR NASHEKAAAA NIDIYSRPSH PHGPGYPSHQ HGPGYPSTVR  180
RDAPLGTKIS LIHARRTGRL RGQAVSAASK NNESNKKEAQ T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-