PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49319.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YC
Protein Properties Length: 218aa    MW: 24495.2 Da    PI: 8.7695
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49319.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.62.3e-121202001999
       NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  ++P ari +i+k+d    +i+aea  l+ ka e f+  ++  ++  a e +++ +    +a++v++ ++fdfl d vp++
  Dca49319.1 120 CAFPTARITRIVKSDGFDCKITAEAVFLINKATEKFVELFSEDAYSYAAEERKSFVGYKHLASVVSEGKMFDFLSDFVPEK 200
                 579*************999******************99999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-20122199IPR009072Histone-fold
PfamPF008084.1E-13122184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.84E-15132200IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMQPQVVLGL ATAKAEKMTG KIKFQKTFSM KKTTNSSSAV AVAGVSKPLK ITFKCRPQQQ  60
QDEEEIEDDE VLRTVKEKKK KKRKGEDENV EDLKKKKAKD ETKAKKKLDE EEGLGLDLEC  120
AFPTARITRI VKSDGFDCKI TAEAVFLINK ATEKFVELFS EDAYSYAAEE RKSFVGYKHL  180
ASVVSEGKMF DFLSDFVPEK ITAEKALAER NPPETLPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783KKKKKRK
27795KKKKKRKGEDENVEDLKKK
37883KKKKRK
48196KRKGEDENVEDLKKKK
593107KKKKAKDETKAKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746081.17e-50ABC transporter F family member 4-like
STRINGXP_010689566.13e-42(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-27nuclear factor Y, subunit C10