PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca49401.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 477aa MW: 55045.6 Da PI: 8.5767

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca49401.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.4	8.5e-07	38	130	6	89
FAR1 6 YAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHel 89 A GF ++k+++ + +r+ e + f+Cs++g++++ + ++ +++ ++++++C+ +++ +++ +++ w++t + HnH+l Dca49401.1 38 IALANGFALVKANNGFKnRRQPELLASYFRCSRYGRSNSVFDP-DNPKKKPKTQKCDCQFRIRAVQNYhcvdNERiilWNITIAKkfGFHNHDL 130 57889*99998865549999************9998877.67777778888888888876555445422212336665555445699988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	1.3E-24	246	341	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MQDSFENLGG DGVDYNPLFV TSDCFADSKL AHKWANEIAL ANGFALVKAN NGFKNRRQPE 60 LLASYFRCSR YGRSNSVFDP DNPKKKPKTQ KCDCQFRIRA VQNYHCVDNE RIILWNITIA 120 KKFGFHNHDL IKYKDGHRHY AGLDEDEKAF VKQEYSSSIA PRDIKSGLHH RTPDKPPPSS 180 RQIYNHTSML RKELMGERNP AQQMLALAVN ANYVHWHETN HMTHELTHVF MSHPEAIKLF 240 RAYPHVILMD STYKTNIYKM TLVEVVGVTP VGSSFLITCV LIPTESEEGY TWLLRRLMDI 300 LECTATSPSA FVTDRELGLV GALRKLYPDT PHLFCRWHVN RAIENRALLI HKTEWYKNHV 360 LSNSETGWYN VINAQSEEAF KEAWVAFSNK WTKLASYVSN TWGEHASKFV LCYTNDYFHL 420 GNTATSRVES AHSLLKAWLK SAHLTLDTMW SRIHSMIEAQ HCKIRKELED FRSPSCV

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MQDSFENLGG DGVDYNPLFV TSDCFADSKL AHKWANEIAL ANGFALVKAN NGFKNRRQPE  60
LLASYFRCSR YGRSNSVFDP DNPKKKPKTQ KCDCQFRIRA VQNYHCVDNE RIILWNITIA  120
KKFGFHNHDL IKYKDGHRHY AGLDEDEKAF VKQEYSSSIA PRDIKSGLHH RTPDKPPPSS  180
RQIYNHTSML RKELMGERNP AQQMLALAVN ANYVHWHETN HMTHELTHVF MSHPEAIKLF  240
RAYPHVILMD STYKTNIYKM TLVEVVGVTP VGSSFLITCV LIPTESEEGY TWLLRRLMDI  300
LECTATSPSA FVTDRELGLV GALRKLYPDT PHLFCRWHVN RAIENRALLI HKTEWYKNHV  360
LSNSETGWYN VINAQSEEAF KEAWVAFSNK WTKLASYVSN TWGEHASKFV LCYTNDYFHL  420
GNTATSRVES AHSLLKAWLK SAHLTLDTMW SRIHSMIEAQ HCKIRKELED FRSPSCV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	PKKKPKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-16	FAR1-related sequence 5