PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca49465.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 756aa MW: 87114.9 Da PI: 7.8097

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca49465.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.4	2.6e-14	79	174	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+++++ +GFs+rk + ++ + it+r f Cs++g++ +++ + ++++ tr +Cka ++ ++ g wev + eHnH+l+p Dca49465.1 79 EMYQKHSQVMGFSTRKGTIRRVsGVGTPITQRYFLCSCQGEHGGGSRRglkgVSVQQKNALITRSECKAWIRTLVNEAGLWEVVDHIIEHNHPLTP 174 58**************999845677799*******99988888888788889999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-12	79	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-29	296	390	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	565	613	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MSNNKTKKPC TITFEIENII DLEKDASEED VFKGGGEDNP VDKEHDEGGV DDNLSDMKDF 60 DFSRSLVGVK AKSSEDLYEM YQKHSQVMGF STRKGTIRRV SGVGTPITQR YFLCSCQGEH 120 GGGSRRGLKG VSVQQKNALI TRSECKAWIR TLVNEAGLWE VVDHIIEHNH PLTPPQWQHH 180 HRSERRISEA EGEVIKAMTE TLVAPSVQFR VASAVAGGDT LVGHTKRDHI NFVNRLKMRS 240 IEGGDATTLI NLMNSRQAED PGFFFRVQFD EDGRLCNLFW RDSMMKEDYL LYHDFVIFDT 300 TYRTNRYNLI CGAFVGINNH WSNVMFGCSF LSDEKAESFE WLFNVFNESM GEDVRLVSIF 360 TVHDQAMSNA IEKVFPASRH RLCQWHIQQN AISHFGSLKH DRAFQKRFNK CLNGCYNKTE 420 FEETWSNMIK VYNLHDHSWF KRLYNIKTKW CTALNNEYFS AGILSSQRSE STNHAMGFQA 480 TKTTSVTEFF RIFELTVARW RSEEERKEFN GIRSTPTSVF PLVDLLQHAS EVYTLDLFRV 540 FDKEFTLAMG TRTIILPSSD SIFVYRVDLP TVEDRPHHVT FDCGNKLVEC TCRKFQVMGM 600 LCYHIIRFLH IHSIPQIPPI YILTRWSKSS KIGVWNRLLP FDMRTTDANN AINWCRSMLI 660 NLNNLLTKCQ DVPEARTALQ KIYGKANDEM QSILVTHNMD NDQLAGQVQD STILDPVRCT 720 TKGRRKSNAS KRKKARKSIE DTPNNVEMYT PFPRLI

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MSNNKTKKPC TITFEIENII DLEKDASEED VFKGGGEDNP VDKEHDEGGV DDNLSDMKDF  60
DFSRSLVGVK AKSSEDLYEM YQKHSQVMGF STRKGTIRRV SGVGTPITQR YFLCSCQGEH  120
GGGSRRGLKG VSVQQKNALI TRSECKAWIR TLVNEAGLWE VVDHIIEHNH PLTPPQWQHH  180
HRSERRISEA EGEVIKAMTE TLVAPSVQFR VASAVAGGDT LVGHTKRDHI NFVNRLKMRS  240
IEGGDATTLI NLMNSRQAED PGFFFRVQFD EDGRLCNLFW RDSMMKEDYL LYHDFVIFDT  300
TYRTNRYNLI CGAFVGINNH WSNVMFGCSF LSDEKAESFE WLFNVFNESM GEDVRLVSIF  360
TVHDQAMSNA IEKVFPASRH RLCQWHIQQN AISHFGSLKH DRAFQKRFNK CLNGCYNKTE  420
FEETWSNMIK VYNLHDHSWF KRLYNIKTKW CTALNNEYFS AGILSSQRSE STNHAMGFQA  480
TKTTSVTEFF RIFELTVARW RSEEERKEFN GIRSTPTSVF PLVDLLQHAS EVYTLDLFRV  540
FDKEFTLAMG TRTIILPSSD SIFVYRVDLP TVEDRPHHVT FDCGNKLVEC TCRKFQVMGM  600
LCYHIIRFLH IHSIPQIPPI YILTRWSKSS KIGVWNRLLP FDMRTTDANN AINWCRSMLI  660
NLNNLLTKCQ DVPEARTALQ KIYGKANDEM QSILVTHNMD NDQLAGQVQD STILDPVRCT  720
TKGRRKSNAS KRKKARKSIE DTPNNVEMYT PFPRLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	721	733	KGRRKSNASKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-91	FAR1-related sequence 5