PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca49477.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 324aa MW: 36446.5 Da PI: 5.9762

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca49477.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.4	6.5e-40	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++k+l+++++++am+++++++++rardPv G++++i++l++q+e kael+l+ + Dca49477.1 33 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNPQDKDIAMHTIMFQSDVRARDPVGGCYSIIRDLHHQIEFCKAELDLVFQ 131 7*********************************************************************************************99877 PP DUF260 100 e 100 + Dca49477.1 132 Q 132 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.057	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-37	33	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MNNNIINNTL PKTNILNTNS STNHHRISSG TQACAACKYQ RRKCAPDCVL APYFPHDRQR 60 QFLNAHKLFG VSNITKIIKN LNPQDKDIAM HTIMFQSDVR ARDPVGGCYS IIRDLHHQIE 120 FCKAELDLVF QQLAICKAQA FQQHSQLMSI NHQHVVVPPL PHPTFQGVVE EDNNGDNNHN 180 NINNNINGNN EEDNEENYRH YHEMLMRCQY DDGDQGGVQY VGEHESDQFS WTPHDDVVLA 240 SSNSSNSHGD CFIVKQDLGS ECDGLPMKLM RLDSSEPPPY GVSDHVDITC GATIQSDGIK 300 FGSHPTTQLS EEIVLKENKI MVGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	34	133	12	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	34	133	12	111	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021754529.1	1e-106	LOB domain-containing protein 27-like
STRING	XP_010686136.1	2e-63	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-59	LOB domain-containing protein 22