PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca49550.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 245aa MW: 27015.9 Da PI: 7.9463

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca49550.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.6e-07	2	33	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ L++l+P++ p K++K++ + +Av YIk Lq Dca49550.1 2 FSDLQSLIPQL---P-HKVDKITLVDEAVSYIKTLQ 33 899*****6...3.89***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.76	1	32	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-6	1	33	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-8	2	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-8	2	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MFSDLQSLIP QLPHKVDKIT LVDEAVSYIK TLQSTFETLQ KQKLDRLNLT RNVPYVVDNN 60 NNNGNNNNNN NDNSGVMAKR SMNNNKGNNN NNDNSGVMAK GSMNNNNNNN NNNNNNNNNN 120 NNNNNSGVMA KDSLNLAASS SQNAPTIKTL TSPNVVLNTF GNNEAQFTVY AVKKPQLFTA 180 LCSILKKHHL DVVGSIISSG VDRCFYTILA RVNEEKFDLL NNDGEFTLEN ICKNAANEMI 240 LCVTA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	7e-12	bHLH family protein