PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49591.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24491.3 Da    PI: 4.153
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49591.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.4e-1213481650
                HHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE CS
      SRF-TF 16 RrngilKKAeELSvLCdaevaviif.sstgklyeys 50
                R+++i+KKA+ LS+LC+++v++i + s +++  ++s
  Dca49591.1 13 RKTTIFKKAKQLSTLCGVDVSLIFYdSGEQTPETWS 48
                9**********************9834455556666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0012149IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.979150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-11566IPR002100Transcription factor, MADS-box
PfamPF003192.4E-91343IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEEREKKLNN TLRKTTIFKK AKQLSTLCGV DVSLIFYDSG EQTPETWSSR PDGVSVINNY  60
LSLTNQPQIA RPRIQPSDIV DEECRAVRDR EFINNLGFEE LNGFASLLAG KIANLNQMHC  120
VKLIFDLSDL GFENITSDDH LLREPPSDLP SPSALGNVDF TFDGLESFSL DDLQFGTTSA  180
TDQVNVESPS RSPLVYESLA NLEFVNDDFD WMKEVITC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-11AGAMOUS-like 36