PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4974.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 27442.7 Da    PI: 4.9742
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4974.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1749951056
               HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               e +++Le++Fe++++++ e++ ++A+++gL+ rqV +WFqNrRa++k
  Dca4974.1 49 EKVKALEQHFEEENKLQPERKVRIAEEVGLEPRQVAIWFQNRRARWK 95
               6789******************************************9 PP
2HD-ZIP_I/II114.56.2e-3742133293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk r+  e+vk+LE++Feee+kL+perKv++a+e+gl+prqva+WFqnrRAR+ktk+lEk+y++L+++ydal+ + ++L++e+ +L ++lke
    Dca4974.1  42 KKSRICLEKVKALEQHFEEENKLQPERKVRIAEEVGLEPRQVAIWFQNRRARWKTKHLEKEYDQLRASYDALMLDYDSLQHEKLALLNQLKE 133
                  99***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.2E-1441101IPR001356Homeobox domain
PROSITE profilePS5007115.714297IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1745104IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1646108IPR009057Homeodomain-like
CDDcd000861.60E-124998No hitNo description
PfamPF000467.9E-154995IPR001356Homeobox domain
PRINTSPR000319.5E-56877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000319.5E-57793IPR000047Helix-turn-helix motif
PfamPF021838.6E-1397137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSQRENNQRK KKAAMYNEEF QEMLDRIEEE DYVDRSEIMG TKKSRICLEK VKALEQHFEE  60
ENKLQPERKV RIAEEVGLEP RQVAIWFQNR RARWKTKHLE KEYDQLRASY DALMLDYDSL  120
QHEKLALLNQ LKELKAKSEG TSIEANNNYT PSISTSIHSN NIPFMGGSSS SSSSTRFESV  180
SVMSNEYQQC KAYQEQLMMM EELGMLNCSD ASCNFFSSVD QPPTLPWQYA TNDFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773183.11e-74homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A2C9WGD42e-54A0A2C9WGD4_MANES; Uncharacterized protein
STRINGXP_010675091.14e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.17e-39homeobox protein 5