PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49763.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family DBB
Protein Properties Length: 167aa    MW: 17817.8 Da    PI: 6.321
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49763.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                +C+ + e++   +C+++  +lC +C  + H+       H++
  Dca49763.1  4 MCDFCAEERSVVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                6*****************************65677777766 PP
2zf-B_box28.92.4e-094690442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 +C+++++++++  C + ++ lC++C + +H g      H+++++
  Dca49763.1 46 LVCERCNSQPASVRCIEERVSLCPNCNMLGHDGgstptfHKTENI 90
                68*****************************87999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
SMARTSM003365.9E-7447IPR000315B-box-type zinc finger
CDDcd000212.50E-7447No hitNo description
PROSITE profilePS501198.9444390IPR000315B-box-type zinc finger
PfamPF006433.7E-54689IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGYMCDFCAE ERSVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNSQPASVRC  60
IEERVSLCPN CNMLGHDGGS TPTFHKTENI SYYSGCPSSA ELSTIWSFFA DISLNASDNS  120
SSQQGVDSIR TVDGGKGNCV NAAAKDGPNF VKSSGIVGHS STPELGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865623.15e-62zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA92e-62COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0K9QBF57e-61A0A0K9QBF5_SPIOL; Uncharacterized protein
TrEMBLD7MLL31e-60D7MLL3_ARALL; Zinc finger (B-box type) family protein
STRINGscaffold_801118.12e-61(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.18e-65B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]