PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4978.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 647aa    MW: 73515.6 Da    PI: 5.538
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4978.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.94.5e-1269146286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+ +evl L+++ +++++    +      W+ vs+k++e gf+rs+++Ckek+e+  + + + ++ ++      s+++++f +le
  Dca4978.1  69 WSSEEVLSLLKIISSLDSPWFPS---PFTWDNVSRKLAEVGFKRSAQKCKEKFEEETRSFNNNRHKSNVI----SQNYRLFGELE 146
                ****************9988877...89********************************9988888765....67888888887 PP
2trihelix96.81.9e-30490580186
   trihelix   1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+++evlaLi++r       + ++r r++ +k+plWe++s+km+e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  Dca4978.1 490 RWPRDEVLALINIRCnlfdnnNGDHRDRESFSKGPLWERISQKMMELGYKRSAKRCKEKWENINKYFRKTKDSSKKR-SIDSRTCPYFHQLS 580
                8*************95554433444444556*********************************************8.78889*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.965124IPR001005SANT/Myb domain
PfamPF138371.6E-967147No hitNo description
PROSITE profilePS500906.73768122IPR017877Myb-like domain
SMARTSM007171.5487555IPR001005SANT/Myb domain
CDDcd122035.52E-26489560No hitNo description
PfamPF138375.0E-20489581No hitNo description
PROSITE profilePS500906.504490553IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MFDGMPEHFL APTTSLSPSF SFHHANFQQQ QQQQQCFDAM MPTCLVQQVG SEPSSLMVPH  60
CVVVDNAPWS SEEVLSLLKI ISSLDSPWFP SPFTWDNVSR KLAEVGFKRS AQKCKEKFEE  120
ETRSFNNNRH KSNVISQNYR LFGELEDLYN NNNNNNNNNN NNNNTNNNNN NNNNNNNNNN  180
NNNNNNDNDD ANNVNDGNNY ANDHLDDDSR EQQSRHLDNT FDFYPSDQMM NNNDDNENDN  240
SDVGDEEGGK GVVGGGEERE EEAKRIMRKR KREKKFEMFK GFCENIVNKV IAKQEEMHCK  300
VLEDMLKREE EKIAREQAWK KQEIDRITQV MQVRAHEQAI VGDRQAKILG FLKKFSSLSS  360
NNNGETNQSL GETLGSVVLK VQNTSTNSLL STSSSMLSQD TISEPTTTTH DQVSNLASQN  420
SLNGLENNPQ LALPISSSSL NQPFKNQVEP VSFDHTSTDA TGQTVSFESS RNHNESKVVV  480
ADVKDDTGRR WPRDEVLALI NIRCNLFDNN NGDHRDRESF SKGPLWERIS QKMMELGYKR  540
SAKRCKEKWE NINKYFRKTK DSSKKRSIDS RTCPYFHQLS HLYNQQGALH DQFECPTNPA  600
GLSGNKLVPS DGATAINTVP SQQNKGIVEQ LPTCQMSSTL NFDYTIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247255GGKGVVGGG
2267273RKRKREK
3267274RKRKREKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846162.11e-136trihelix transcription factor GTL2
TrEMBLA0A0K9QL431e-134A0A0K9QL43_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-34Trihelix family protein