PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4987.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 352aa    MW: 39366.4 Da    PI: 4.423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4987.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.93.9e-1011319154128
        NAM  54 eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                ++++ yfF++  k+ ++ kr  r + ++g+W  + ++++v++  g+++g+ k   f     k ++   +k +W mhey++
  Dca4987.1 113 GSDSGYFFTRLTKSRPKAKRFYRvVKDKGTWLDKSSTQKVCDCFGTAIGCYKYYKFIpfelK-KDDPLNKHEWHMHEYTM 191
                33355******************6667***************999********999987643.444458*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-9113198IPR003441NAC domain
PfamPF023651.5E-5116190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNAAAGGALD MMNPNEALEI IDKLASNSHN WSMDSRSIKK KGNESVQALS SKLDDLTNQF  60
SKFMKGGSSS SSAPLHLSCQ LCGVKGHEAA ECMNVTEMEQ ANAMSGDDGG DEGSDSGYFF  120
TRLTKSRPKA KRFYRVVKDK GTWLDKSSTQ KVCDCFGTAI GCYKYYKFIP FELKKDDPLN  180
KHEWHMHEYT MYNNGDYKDE ILMMPQDEFQ GYVYQQSFSS DTYNNVGVNQ GAGDVEFEPY  240
GVGYQANFEG ISNQVMLLDE YQGRVHEQPL SSDTNNNANV NQGGDVLRMD EDFNEVLRNF  300
QSKIQQEGDQ NQPIVEQSSL AEGCYPTSLD PFMSEEEQLA ASKKSLEDLL NS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126135RPKAKRFYRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-