PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49884.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 190aa    MW: 22011.9 Da    PI: 4.8307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49884.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31129187159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +dDgy+WrKYG+K+vk++++pr+YY+C++ gC vkk+ver+++d+++v++tYeg+Hnh+
  Dca49884.1 129 VDDGYKWRKYGKKMVKNNPNPRNYYKCSTDGCLVKKRVERDRDDTRYVITTYEGTHNHP 187
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-33114188IPR003657WRKY domain
SuperFamilySSF1182905.23E-28121188IPR003657WRKY domain
PROSITE profilePS5081131.617124189IPR003657WRKY domain
SMARTSM007742.7E-35129188IPR003657WRKY domain
PfamPF031062.6E-24130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MYISMAINPG STTFFGLQQF RLNNMNSHMT NTTTTTTNTS VESSGSDQFV ECSEFEGSEF  60
FSFEQWANEQ EPVGFEQNVQ DYGFAENRLY DVGGNSRDQT EDENNTGDIN GRERKERVAF  120
RMMSETDVVD DGYKWRKYGK KMVKNNPNPR NYYKCSTDGC LVKKRVERDR DDTRYVITTY  180
EGTHNHPSTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-26119186774Probable WRKY transcription factor 4
2lex_A7e-26119186774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744383.19e-69probable WRKY transcription factor 50 isoform X1
TrEMBLA0A0K9R6901e-53A0A0K9R690_SPIOL; Uncharacterized protein
STRINGXP_010669354.14e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-39WRKY DNA-binding protein 50