PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50010.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 293aa    MW: 31415.5 Da    PI: 6.042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50010.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10142186554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Dca50010.1 142 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 186
                 99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-15139196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7142186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANNQGNDPP NQDFFEHLLD MQSYAAAAAA AAAAAGASGD SSLAGNSMLL QLNSPSSAYP  60
SGPGYPLGLS LDPASKPVFM KPDEGGPSSV KRFRDDFVDV SNSAPKNVFH GQQMPNPVPV  120
VPHQPSIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT DRAAMLDEIV  180
DYVKFLRLQV KVLSMSRLGG AGAVVPLVTD MPISSVEEEG GEGGQGQPVW EKWSNDGTER  240
QVAKLMEENV GAAMQFLQSK ALCIMPVSLA SAIYHTQPPD SSPLVKPESN PPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679161.11e-138PREDICTED: transcription factor UNE12
SwissprotO227681e-116UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4DYZ21e-133A0A2I4DYZ2_JUGRE; transcription factor UNE12-like
STRINGXP_010679161.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-99bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]