PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca50134.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 17319.9 Da PI: 4.7917

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca50134.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.5	3.9e-09	3	39	8	44
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +++ f kR +g+lK +E+ +LCd++ + i++ ++g Dca50134.1 3 RKKACFDKRSKGLLKEVSEITTLCDVNGCAIMYNPNG 39 667889***************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.316	1	39	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.05E-12	3	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-10	3	39	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MARKKACFDK RSKGLLKEVS EITTLCDVNG CAIMYNPNGG DQPELFPADE VPKIINVILR 60 FQRLPVEDQT KYMLSQETVL DPRLVMARFI IDRYIKNNVE NVAVDSPRFP VPDLLNQLGP 120 LYPEAVSTSL CVGPPGTVTR DGFELGSTSG SKAACDE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	2e-15	AGAMOUS-like 87