PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50159.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28487.2 Da    PI: 9.6186
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50159.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-312877150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Dca50159.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 77
                79***********************************************8 PP
2K-box107.22e-35961955100
       K-box   5 sgksleeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 s+ s++ea+a+++qqe+akL+++i+++     +  Rh++Ge+L+ L++keL++Le++Lek++++iRskKnell+++ie +qk+e +l+++n+ Lr+k++
  Dca50159.1  96 STGSVAEANAQYYQQESAKLRSQIRTMTesnrSLSRHMMGEGLTGLNMKELKNLETKLEKGISRIRSKKNELLFAEIEFMQKREVDLHNNNQLLRAKIA 194
                 455599*********************966555569*************************************************************98 PP

       K-box 100 e 100
                 e
  Dca50159.1 195 E 195
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.4032080IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-402079IPR002100Transcription factor, MADS-box
CDDcd002654.23E-442194No hitNo description
SuperFamilySSF554554.58E-332197IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-332242IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PfamPF003192.0E-262976IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-335778IPR002100Transcription factor, MADS-box
PfamPF014864.5E-23103193IPR002487Transcription factor, K-box
PROSITE profilePS5129714.032105199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEFSSQITRE EGSPSSQRKL GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALIVFSTR GRLYEYANHS VKGTIERYKK TCSDTSTGSV AEANAQYYQQ ESAKLRSQIR  120
TMTESNRSLS RHMMGEGLTG LNMKELKNLE TKLEKGISRI RSKKNELLFA EIEFMQKREV  180
DLHNNNQLLR AKIAENERAQ QSMSLMPGGG DYELAPPPQS FDSRNYFQVN ALQPNEQYSC  240
QDQTPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-202088169Myocyte-specific enhancer factor 2B
1tqe_Q5e-202088169Myocyte-specific enhancer factor 2B
1tqe_R5e-202088169Myocyte-specific enhancer factor 2B
1tqe_S5e-202088169Myocyte-specific enhancer factor 2B
6c9l_A5e-202088169Myocyte-specific enhancer factor 2B
6c9l_B5e-202088169Myocyte-specific enhancer factor 2B
6c9l_C5e-202088169Myocyte-specific enhancer factor 2B
6c9l_D5e-202088169Myocyte-specific enhancer factor 2B
6c9l_E5e-202088169Myocyte-specific enhancer factor 2B
6c9l_F5e-202088169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723464.11e-156floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408721e-132AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0F6T2Y11e-155A0A0F6T2Y1_SILDI; SDM1
STRINGXP_010687169.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-115MIKC_MADS family protein