PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca50288.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 482aa MW: 54964.6 Da PI: 6.8662

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca50288.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.9	6.2e-12	13	51	19	57
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 F+ ++yp+++ ++e+A l+Lte+qV+ WF+ rR k+k+ Dca50288.1 13 FADHKYPTESLKAEMAITLNLTEKQVSGWFCHRRLKDKR 51 899**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.4E-4	6	56	IPR001356	Homeobox domain
CDD	cd00086	3.22E-9	13	51	No hit	No description
Pfam	PF00046	2.3E-9	13	51	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.536	13	52	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.3E-11	13	51	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.52E-10	13	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MLTKLHVPPA IPFADHKYPT ESLKAEMAIT LNLTEKQVSG WFCHRRLKDK RLAKQLEQQG 60 PGRQDLSSGI IQDRGSGLKQ DSCSSTKQAD YKRVDPREVE SQRYCHENLP VAEPIIQQRS 120 NDDGTEMDDT SSESNSPVQE SFYPQKNSHL IAETTEYRTS NGFVQHNRGR VGPSGYLKIK 180 GQTENAAITA VKRQLGRHYR EDGPSLGIEF DPLPPGAFEP PCNNIEDDDS YGITEPISLS 240 SRDIAGFHKR PTLGTIRDED TYEAPDNMHM HKSNPHLDKF SFRQPKQRLP FPNHKRGLPD 300 RDSSFGIDSY SGYHNNRNSS AVLKQEFPGT RPESRSDFHH SYDRNNDNDH DDNTALPDYD 360 DVHPKVVHRR EQFSSRPGGV GVRHKDPVYK DDRMPSNRIP KDEELYVGRR STSEFQDSVK 420 PKMRPTNELK AKKRAREEFP EEEHPVRLPQ DPILWSKQQK GPKQMPPSSS EDETAETSSS 480 MN

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MLTKLHVPPA IPFADHKYPT ESLKAEMAIT LNLTEKQVSG WFCHRRLKDK RLAKQLEQQG  60
PGRQDLSSGI IQDRGSGLKQ DSCSSTKQAD YKRVDPREVE SQRYCHENLP VAEPIIQQRS  120
NDDGTEMDDT SSESNSPVQE SFYPQKNSHL IAETTEYRTS NGFVQHNRGR VGPSGYLKIK  180
GQTENAAITA VKRQLGRHYR EDGPSLGIEF DPLPPGAFEP PCNNIEDDDS YGITEPISLS  240
SRDIAGFHKR PTLGTIRDED TYEAPDNMHM HKSNPHLDKF SFRQPKQRLP FPNHKRGLPD  300
RDSSFGIDSY SGYHNNRNSS AVLKQEFPGT RPESRSDFHH SYDRNNDNDH DDNTALPDYD  360
DVHPKVVHRR EQFSSRPGGV GVRHKDPVYK DDRMPSNRIP KDEELYVGRR STSEFQDSVK  420
PKMRPTNELK AKKRAREEFP EEEHPVRLPQ DPILWSKQQK GPKQMPPSSS EDETAETSSS  480
MN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673742.1	1e-172	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A0K9RSS5	1e-155	A0A0K9RSS5_SPIOL; Uncharacterized protein
STRING	XP_010673742.1	1e-171	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-59	HB-other family protein