PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca50295.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

SRS

Protein Properties

Length: 238aa MW: 24566.9 Da PI: 8.5798

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca50295.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	205	2e-63	21	181	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100 gta+CqdCGnq+kkdC h+RCRtCC+srgfdC+thvkstW+paa+rrerq+ + ++ ++ +++ +k++r +s+++s +s+++++ ++++ Dca50295.1 21 GTATCQDCGNQSKKDCIHQRCRTCCRSRGFDCSTHVKSTWIPAARRRERQAITGTSGGGGGGASsgSTSGAKKPRLVSSQTSSHTSTSNTP----PRSF 115 789*********************************************99998877665555336666677776644444333333333....3344 PP DUF702 101 etss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ss lP +v+++avf+cv+v++v+dge+e+aYq++v+i+Gh+fkG+LydqG+e+ Dca50295.1 116 DASSshhhqdgsyketLPGQVRAPAVFKCVKVTAVEDGEDEFAYQAVVKINGHLFKGFLYDQGVES 181 4444445578899999*********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-59	22	180	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-26	24	66	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-28	132	179	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGKNKSIDFE LPTSSGMTVL GTATCQDCGN QSKKDCIHQR CRTCCRSRGF DCSTHVKSTW 60 IPAARRRERQ AITGTSGGGG GGASSGSTSG AKKPRLVSSQ TSSHTSTSNT PPRSFDASSS 120 HHHQDGSYKE TLPGQVRAPA VFKCVKVTAV EDGEDEFAYQ AVVKINGHLF KGFLYDQGVE 180 SSRDGFPNLS ELHLGGSSGG GGSGGGRHGP LLDTSDVYGA SGGGGGLIGG SSYGNTIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022007727.1	7e-97	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	7e-75	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A251SHL8	7e-97	A0A251SHL8_HELAN; Putative lateral root primordium protein
STRING	XP_008363042.1	5e-92	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-64	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]