PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50397.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family E2F/DP
Protein Properties Length: 340aa    MW: 37627 Da    PI: 8.4437
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50397.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP55.11.2e-1795156571
     E2F_TDP   5 sLrlltqkflkllekseegivtlnevakeLvse....dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 +Lr++++k        +e + ++ ++  +L ++    ++kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Dca50397.1  95 GLRQFSMK--------DELVAEYADANIALGNDeqgdEEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 156
                 55555555........333344444444443337777999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.5E-1591156IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-23101160IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-12102157IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.3E-14108156IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011387.8E-52163326IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-37163278No hitNo description
PfamPF087819.8E-36164271IPR014889Transcription factor DP, C-terminal
CDDcd144586.23E-36164262IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MFTCNLQEDG EKKPKGINRS WGTTVSGQSV STSGSVGSRS SRSEAGMATQ GRDITALRLS  60
NFEIQGDDSA SQNAAASKKK KRGQRATGTD KSGRGLRQFS MKDELVAEYA DANIALGNDE  120
QGDEEKNIRR RVYDALNVLM AMDIISKDKK EIQWRGLPRD TLADIEELKT ERVALKKRIE  180
KKTAYLRELE EQFTGYQNLI QRNQQLYGNG TAPSGGVTLP FILAQTRANA TVEVEISEDM  240
QLVHIDFNST PFELQDDNFV LKHIKFCKKP QLDSRVSNPP TSAGDDDIPM PNADHPRTLS  300
SSSSKPCHAL ATRPLSPPRL ESSPSQFEPS YRLSSPRSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-2285161193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678871.11e-149PREDICTED: transcription factor-like protein DPB
RefseqXP_019105287.11e-149PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-122DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9RGC01e-134A0A0K9RGC0_SPIOL; Uncharacterized protein
TrEMBLA0A2G9FZK61e-134A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_010678871.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-103Transcription factor DP