PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50560.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 210aa    MW: 23176.4 Da    PI: 4.6951
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50560.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.32.1e-071221653590
        FAR1  35 CskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 C+           +  ++r+++++ tgCka+++   + d+ +++++++leHnHel 
  Dca50560.1 122 CK-----------KGGQKRSEKSNVTGCKACFEGAIQ-DDGFVIKTVHLEHNHELD 165
                 33...........445666777789********9999.999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-4108166IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSGNNDGWFD LNEYYDEEFG GSEGFFADNE GNEVELNSNG GSIEPVENSI EEVVSTEESP  60
NPVEEAVNAV EGGNGTNDVI ADPTSCRSNS LKVEFRNAGV TRKCGGKKEP RYHMMERLRL  120
ACKKGGQKRS EKSNVTGCKA CFEGAIQDDG FVIKTVHLEH NHELDPANSR FKAAVVVGQV  180
WPAGSKAEEG REKMVSDRED GRRWRRWLSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-