PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50574.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 568aa    MW: 64002.2 Da    PI: 4.9498
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50574.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like751e-23187242155
     G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++Wt eLH++Fv+av+q+G  s+k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Dca50574.1 187 KARVVWTIELHQKFVKAVNQIGiDSDKVGPKKILDLMNVPWLTRENVASHLQKYRL 242
                 68*******************7447899***************************8 PP
2Response_reg78.72e-26221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev++   ++eal+ll++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    Dca50574.1  22 VLVVDDDPTWLKILEKMLKKCSY-EVTTSGLAREALRLLRDRKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 116
                   89*********************.***************888889**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el +
    Dca50574.1 117 DYLLKPIRMKELKN 130
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-4319169No hitNo description
SuperFamilySSF521725.83E-3519143IPR011006CheY-like superfamily
SMARTSM004489.5E-3120132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.91321136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2322130IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.18E-3023135No hitNo description
Gene3DG3DSA:1.10.10.602.2E-27185247IPR009057Homeodomain-like
SuperFamilySSF466896.81E-17186246IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-21187242IPR006447Myb domain, plants
PfamPF002491.3E-6189241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MIMESGFSSP RRSEAFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTSG LAREALRLLR  60
DRKDGFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL  120
KPIRMKELKN IWQHVVRKRL HEVRDIEFID DRDHPNDGYY GGDPTTLKKR KDVENDKESN  180
DLSLNKKARV VWTIELHQKF VKAVNQIGID SDKVGPKKIL DLMNVPWLTR ENVASHLQKY  240
RLYLSRIGKG DDCMESSFGA TKNTDFSPKE SGGGSISVQN SSYYALHSDV TSNPMMPPLQ  300
SSECKTHDQK LKTTEPKKSV NNENSDPQRT ANSKAGLNST FQHTVFDSTV SGQWQFKPEL  360
KPQPKSKNCF NQPVVPILQQ QIPSDLLEHA PEINPGLFNE SDGFKLIDVK PLISKPYSVP  420
NPGTFGCIFD VPLDVKNQNC CSPSKNFDKQ DPLAVLESTT FDPQVLETTT FDPNSNNVKG  480
SENESQNQAT SETEPAFGVV SEDLMFRWLQ GGDGFGIDDV GFSDSNFAEP INDQVPFPPY  540
YMPKFGVEYE YPYDWVEYPV VDQGLLFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17186247463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682390.10.0PREDICTED: two-component response regulator ARR11 isoform X1
SwissprotQ9FXD61e-122ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A0K9QRY80.0A0A0K9QRY8_SPIOL; Two-component response regulator
STRINGXP_010682390.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-113response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]