PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5065.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 232aa    MW: 26532.5 Da    PI: 7.1488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5065.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.87.6e-2868155291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                fYn+YA++vGF +r+sk ++skr+g+ + r +vC+keg+r ++k++  +  r+raetr+gC+a++ ++k ++gkw+vtk+++eH+H+l+p
  Dca5065.1  68 FYNTYATRVGFVIRVSKLSRSKRDGSAIGRSLVCNKEGYRISDKRE--RVLRQRAETRVGCRATILIRKVSSGKWVVTKFVKEHTHPLTP 155
                ******************************************9988..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2568155IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDYGNSVETD EKHVDENEMG GSSVEGGQSQ DDRMNNDELF ESDIPVGQPL DEPYVGQEFE  60
SEAAAQAFYN TYATRVGFVI RVSKLSRSKR DGSAIGRSLV CNKEGYRISD KRERVLRQRA  120
ETRVGCRATI LIRKVSSGKW VVTKFVKEHT HPLTPGKGRK ERTFDQNSNE YDKIRDLQQQ  180
LAAEKKRSAT YKRHLEMLFE HIDEHNQSLS KKIQGIVESV REFEAVEKES GR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672213.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2I4G7W21e-115A0A2I4G7W2_JUGRE; protein FAR1-RELATED SEQUENCE 12-like isoform X1
STRINGXP_010672213.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-87FAR1 family protein