PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca50747.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 734aa MW: 85545.3 Da PI: 8.0045

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca50747.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59	1.5e-18	30	123	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY YA +GF++r ++++ r+g+ +++ vCs+egk +++kk+ e+ +r++++ +gCka++k+k +g +++++++eHnHel+ Dca50747.1 30 SFYGIYAVAIGFDIRLYTQHRW-RDGTLMDKLIVCSREGKYTPRKKTesmnnsVENVERKTNVRAIGCKARIKLKCI-KGILKIDQFVEEHNHELV 123 59*************99998.8888**************99999887667777888999*******9.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-14	30	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-28	245	337	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.545	527	563	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	538	565	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.8E-4	539	558	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MNEGILCETV EEDFKPYVGQ EFVSVKEAAS FYGIYAVAIG FDIRLYTQHR WRDGTLMDKL 60 IVCSREGKYT PRKKTESMNN SVENVERKTN VRAIGCKARI KLKCIKGILK IDQFVEEHNH 120 ELVSVENREF QKLCTSLTDY HKSFIMSNIR LNIGATKTYR MLKEHSNGFQ NIGATLNHFK 180 NFQRDIKCFI HDRDGQLFID RLKSMEENCP GFFFDYDVDE EGCLRRAIWA DRIAIRNYEL 240 FGDAVTFDPT YSTNKYSMVF TPFTGVDNHK KSVTFCGALI AKEDFESFNW VFRRFLTAMG 300 GKEPYYIITD QDPGIIKSVS HIFRRSRHRF CTWHIMNKVA VKYGATNNDY REFLSKLNSI 360 VWDKEIEEAE FDIRWKEIMN EHGVGEGDWF EDCFCIRNQW VQAHCRDLRM GALLRTTQRS 420 ESTNSFFKKF EHKSGTLVEF WLRFESAMEQ QRHSKKKSDN DDQQSTPKCQ THLKIEEYAS 480 KVYTHQVFKD VQEEIILSVG KCRCTGYKEE NEEQISSVED AVRGRVFDVH YHPGTFNVRC 540 SCRLYERLGI LCRHIIWIYT GHAVEEIPKM FVSRRWMKDS VCDVGESMKG LCWSGKGDGR 600 QAEMTKLWTE INETVAFLES GDLETVKQMC DSLRKFREDH KSSEVKVTKE QEFEKLLGCK 660 VSSEISIMPP KKSKNKGSGK RMLSTKSVAV AESSKAKRLC NNCKQMAHHD KRNCPNPFVE 720 RASIRSESAD EHEE

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MNEGILCETV EEDFKPYVGQ EFVSVKEAAS FYGIYAVAIG FDIRLYTQHR WRDGTLMDKL  60
IVCSREGKYT PRKKTESMNN SVENVERKTN VRAIGCKARI KLKCIKGILK IDQFVEEHNH  120
ELVSVENREF QKLCTSLTDY HKSFIMSNIR LNIGATKTYR MLKEHSNGFQ NIGATLNHFK  180
NFQRDIKCFI HDRDGQLFID RLKSMEENCP GFFFDYDVDE EGCLRRAIWA DRIAIRNYEL  240
FGDAVTFDPT YSTNKYSMVF TPFTGVDNHK KSVTFCGALI AKEDFESFNW VFRRFLTAMG  300
GKEPYYIITD QDPGIIKSVS HIFRRSRHRF CTWHIMNKVA VKYGATNNDY REFLSKLNSI  360
VWDKEIEEAE FDIRWKEIMN EHGVGEGDWF EDCFCIRNQW VQAHCRDLRM GALLRTTQRS  420
ESTNSFFKKF EHKSGTLVEF WLRFESAMEQ QRHSKKKSDN DDQQSTPKCQ THLKIEEYAS  480
KVYTHQVFKD VQEEIILSVG KCRCTGYKEE NEEQISSVED AVRGRVFDVH YHPGTFNVRC  540
SCRLYERLGI LCRHIIWIYT GHAVEEIPKM FVSRRWMKDS VCDVGESMKG LCWSGKGDGR  600
QAEMTKLWTE INETVAFLES GDLETVKQMC DSLRKFREDH KSSEVKVTKE QEFEKLLGCK  660
VSSEISIMPP KKSKNKGSGK RMLSTKSVAV AESSKAKRLC NNCKQMAHHD KRNCPNPFVE  720
RASIRSESAD EHEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-77	FAR1-related sequence 5