PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50815.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 126aa    MW: 14710 Da    PI: 9.7091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50815.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.6e-2230115597
                 -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + ++s+ l++p +f+ e  +g+   +k+++l++++g++W+ k   + k++r+++t GWke++k++ L  gDf+vFk  ++s f  +v vf
  Dca50815.1  30 Y--LSDFNSHKLMIPPQFIIEQyKGN--IPKEIKLRNKNGKTWRTKT--QVKKQRVFITHGWKEYAKDHSLVRGDFMVFKQLKESLF--FVDVF 115
                 4..67788889*******76665766..7889***************..*******************************5554555..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2220117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2221118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.11324118IPR003340B3 DNA binding domain
SMARTSM010198.5E-1826118IPR003340B3 DNA binding domain
PfamPF023621.1E-1927115IPR003340B3 DNA binding domain
CDDcd100171.44E-1535115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MKIVEMEGVD DSSFESEVAN KTNAAFFTIY LSDFNSHKLM IPPQFIIEQY KGNIPKEIKL  60
RNKNGKTWRT KTQVKKQRVF ITHGWKEYAK DHSLVRGDFM VFKQLKESLF FVDVFGVDGT  120
LKDEPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-19B3 family protein