PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50831.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 392aa    MW: 44122.2 Da    PI: 8.5247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50831.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.3e-33169226260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++C v+kkvers  d+++ ei+Y+geHnh+k
  Dca50831.1 169 SDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCAVRKKVERSF-DGEMAEIVYKGEHNHPK 226
                 7****************************************.***************85 PP
2WRKY104.65.5e-33323380259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+vkg+++prsYY+Cts++C+v+k+ver+ +dp+++++tYeg+Hnhe
  Dca50831.1 323 GDGFRWRKYGQKVVKGNPYPRSYYKCTSHKCNVRKHVERAMDDPSAFITTYEGKHNHE 380
                 6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.971163227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-29164227IPR003657WRKY domain
SuperFamilySSF1182907.85E-26167227IPR003657WRKY domain
SMARTSM007744.9E-37168226IPR003657WRKY domain
PfamPF031066.3E-26170225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-34308382IPR003657WRKY domain
SuperFamilySSF1182901.44E-28317382IPR003657WRKY domain
PROSITE profilePS5081133.683317382IPR003657WRKY domain
SMARTSM007741.2E-37322381IPR003657WRKY domain
PfamPF031062.9E-26324380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLGMEVDDAA DRTVVAKPVA SRPTSSGFRT FSELLAGATD PSPSRDNVWS TVRPATNTTP  60
HNTVEASVTA PISSDTVASV EKQSVMVCRP LAKVVSKATV SLLASMGNFN TMNQQAPTKT  120
DSQDQGRSII SQPTSCSLPH VEQSQQVDML EEEHKMTASY AINIDRISSD GYNWRKYGQK  180
QVKGSEYPRS YYKCTHPNCA VRKKVERSFD GEMAEIVYKG EHNHPKPYFL KRSNSGVQGR  240
DYDGSKHESN ENVGEGNDAP ETRFCEQSVM LLDNPEVSAE RVNDPKGKRR KQVNQRNEAY  300
TCERGTEETR IWVRNNVEPE IMGDGFRWRK YGQKVVKGNP YPRSYYKCTS HKCNVRKHVE  360
RAMDDPSAFI TTYEGKHNHE RPLSLNKLLL DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30167382877Probable WRKY transcription factor 4
2lex_A2e-30167382877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289195.11e-118WRKY transcription factor 44 isoform X1
TrEMBLA0A2P5FXH41e-117A0A2P5FXH4_TREOI; WRKY domain containing protein
STRINGXP_009342023.11e-118(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-85WRKY family protein