PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca50986.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 258aa MW: 29144.9 Da PI: 5.0857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca50986.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.2	2.2e-07	86	176	5	90
FAR1 5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF++ +++++ + + + r++ +ke + + k + ++r+++++ tgCk ++ e ++ +++ +++l+HnH+l Dca50986.1 86 DYAMKKGFEIYTRSNNLMeEYLEAGVGRQYGGNKEPRYHMMKMLrlackKGGRKRSENSNVTGCKVFFEAAVE-NELFVIRSCRLDHNHDLD 176 7******9988887762444555677777777766666555589987777888999999*****999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-6	85	177	IPR004330	FAR1 DNA binding domain
CDD	cd09272	3.09E-22	194	240	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAGILEEIFD LNVDYDEEVE SDSNSLPILE DENKVQEIEY NAQPSNLMEQ AVITLEGQNA 60 NNVEVTEPSV GMTFENCDSF AAFCFDYAMK KGFEIYTRSN NLMEEYLEAG VGRQYGGNKE 120 PRYHMMKMLR LACKKGGRKR SENSNVTGCK VFFEAAVENE LFVIRSCRLD HNHDLDPENS 180 RFTVSARARR TPAVFHERTK HIEIDCHFVR DAIKKGLIAP SYVPTSTQLA DVLTKSLGAP 240 QFHSLIGKIG VRNLYAPS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	5e-06	FAR1-related sequence 2