PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50999.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 477aa    MW: 52626.1 Da    PI: 5.6164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50999.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31246304259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Dca50999.1 246 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 304
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925240306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-31241306IPR003657WRKY domain
SuperFamilySSF1182903.53E-26243306IPR003657WRKY domain
SMARTSM007741.4E-37245305IPR003657WRKY domain
PfamPF031061.0E-25247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDNYLGDLAD IVRASGGVNN DNPTTTTTRT AASGDQMSTW NFGSPDTRTS NTHQSYEYND  60
LYTFSDPLLP DIDPISSPGP FSLNMGVQDG SNDNTISTEA FSSNTGLLLQ QHMQQAAATT  120
TSEIYHLGHE YQPKLAQISP SNIPSHSNNN NNNRNNNCNS NNSNNNSNSN NNYVGKRSFG  180
FMSSETVGVN NASSSSSPKE GFIGGHQIPS PRNSGIKRRK TQAKKVVCIP ATGAANSRQT  240
GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  300
HNHPWPTQRN ALAGSSRSSH PSKEKTLVKD EINDKEEQYD VDTRNGPIQS PVNYPATGNP  360
SKKSSLMKEE EATTLINDVQ VQNKLEENNV LDYEGDDHQL VHNNKSYRPT IQQCDQDFFK  420
DLVEFEGGDD PLNLLFAQEA KGSDPLFSGF FDWTTQNFAT TKDVIDDCDP NNGSTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-25220307280Disease resistance protein RRS1
5w3x_D6e-25220307280Disease resistance protein RRS1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021763860.11e-106probable WRKY transcription factor 35
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.15e-71WRKY DNA-binding protein 14