PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51070.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 283aa MW: 30602.6 Da PI: 5.0277

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51070.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.7	2e-11	57	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r Rt+ q+ s+ qk+ Dca51070.1 57 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKH 101 7***************************89*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.918	50	106	IPR017930	Myb domain
SuperFamily	SSF46689	2.32E-16	52	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-18	53	105	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-9	54	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-11	55	101	IPR009057	Homeodomain-like
CDD	cd00167	5.91E-9	57	102	No hit	No description
Pfam	PF00249	1.1E-9	57	101	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0030307	Biological Process	positive regulation of cell growth
GO:0046686	Biological Process	response to cadmium ion
GO:0048366	Biological Process	leaf development
GO:2000469	Biological Process	negative regulation of peroxidase activity
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGNLSHFGSS LHQNAAVSAT TPGSPAAAPA AAAADGYGSE DFVAGSSSSR DRKKGIPWTE 60 EEHRMFLLGL QKLGKGDWRG ISRNYVISRT PTQVASHAQK HFIRQSNVSR RKRRSSLFDI 120 VADEGGDTQM VSEDFPEAQQ LEAEIESNDL FTSAPSLDEE NESMVSSNSN EGEPDTTDLE 180 TSQSSYFPVV YPTYVSPFYP YPVPLWTTGY NLEPAKETHE VVKPTAVHSK NPINVDELVG 240 MSKLSLGETI GSGEQSSLSK KLLQGSSSRQ SAFHANPISN SSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00551	DAP	Transfer from AT5G47390	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021757821.1	1e-131	transcription factor MYBS3-like
Swissprot	Q9LVS0	1e-111	KUA1_ARATH; Transcription factor KUA1
TrEMBL	A0A0S3R5R0	1e-127	A0A0S3R5R0_PHAAN; Uncharacterized protein
STRING	XP_010677080.1	1e-126	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-87	MYB_related family protein

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]