PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51071.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 339aa    MW: 37017.2 Da    PI: 9.4043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51071.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18196250256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Dca51071.1 196 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 250
                 788899***********************************************98 PP
2HD-ZIP_I/II128.13.6e-41196285191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
   Dca51071.1 196 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCEQLTEENRRLQKEVQELR-TL 285
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.5E-1679163IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.5E-19171253IPR009057Homeodomain-like
SuperFamilySSF466891.55E-18185253IPR009057Homeodomain-like
PROSITE profilePS5007117.443192252IPR001356Homeobox domain
SMARTSM003893.3E-16194256IPR001356Homeobox domain
PfamPF000464.7E-16196250IPR001356Homeobox domain
CDDcd000867.09E-16196253No hitNo description
PRINTSPR000313.7E-5223232IPR000047Helix-turn-helix motif
PROSITE patternPS000270227250IPR017970Homeobox, conserved site
PRINTSPR000313.7E-5232248IPR000047Helix-turn-helix motif
CDDcd146860.00511245283No hitNo description
PfamPF021836.1E-11252285IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.9E-26252295IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMVVAKDDLG LSLGLGLSSS STAAAATTTT TNHTNNRNNN NNHQSGFMMM INQNRHQTSS  60
FSNNNITTTT NNNATATASS PFNLNLLTPS TAAGGGSSFL HKLQRNLSSD SFPTSDRNSD  120
TCRLFLRGID VNRPAGGSAA DEEDAGVSSP NSTVSTVSGK RSLGERDSAG AGDDLDAERA  180
SSRGLSDDED GGENSRKKLR LSKDQSAILE ESFKEHNTLN PKQKLALAKR LGLRPRQVEV  240
WFQNRRARTK LKQTEVDCEF LKRCCEQLTE ENRRLQKEVQ ELRTLKMSPQ FYMQMTPPTT  300
LTMCPSCERV AVPPSAQPKP VPVNPWVTTP GPVRPFARS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200SRKKLRL
2244252RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677088.11e-151PREDICTED: homeobox-leucine zipper protein HAT4 isoform X3
SwissprotP466013e-95HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0K9RUY11e-127A0A0K9RUY1_SPIOL; Uncharacterized protein
STRINGXP_010677086.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-90homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]