PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51187.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 395aa    MW: 42713.3 Da    PI: 6.8698
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51187.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.1e-061450539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                 C++++   + l+C+ +  +lC  C  ++H    H v
  Dca51187.1 14 GCDNCHAATALLYCRADAAYLCGACDAKIHVAncHGV 50
                5******99*********************5557765 PP
2zf-B_box24.74.9e-0858102341
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                  ++C+ +e+ ++   C+ +  +lC +C   +H+       H++ p
  Dca51187.1  58 VWMCEVCEQAPAAVACKADAAMLCTSCDHDIHSAnplarrHERAP 102
                 689*****************************6578888888766 PP
3CCT69.49.5e-24318360143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R+a++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpRvKGrFvk+
  Dca51187.1 318 RAARVLRYREKKKNRKFEKTIRYASRKAYAETRPRVKGRFVKR 360
                 99***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.2861060IPR000315B-box-type zinc finger
SMARTSM003362.2E-41053IPR000315B-box-type zinc finger
CDDcd000213.24E-71560No hitNo description
SMARTSM003368.3E-1256103IPR000315B-box-type zinc finger
PROSITE profilePS5011910.49556103IPR000315B-box-type zinc finger
PfamPF006433.3E-658102IPR000315B-box-type zinc finger
PfamPF062035.1E-18318360IPR010402CCT domain
PROSITE profilePS5101716.559318360IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MKGLLSGWGL SARGCDNCHA ATALLYCRAD AAYLCGACDA KIHVANCHGV MAVRHERVWM  60
CEVCEQAPAA VACKADAAML CTSCDHDIHS ANPLARRHER APVVPFVDSA VDAAGRTSSA  120
AAASTFLNPN HTNASAAVAT AVPAPVKFSD NDDDAEAEAW LIPNPNSSFL YSESNLLDFN  180
YSGTILGKKS PEQNQQKRCE NQSFAFTDSV VPTQSNGNLN FSNTPDHLFD LGFDIDFSQP  240
AKHHNKLNNN NNNKNKNDNQ QFQLFSSFNF SAQNSVSSSE IGVVPEANAN STAEVSYNIC  300
NSVTSSAAVD GGAPALDRAA RVLRYREKKK NRKFEKTIRY ASRKAYAETR PRVKGRFVKR  360
TGNNETSEIG QMFGSGDDCG FDFGLDQGYG VVPTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856630.11e-134zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A0K9QX531e-133A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGXP_010688513.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-64CONSTANS-like 5