PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51244.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 741aa MW: 86403.8 Da PI: 8.2266

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51244.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.5	2.1e-18	37	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY YA +GF++r ++++ ++g+ +++ vCs+egk +++kk+ e+ +r++++ +gCka++k+k +g ++++++++HnHel+ Dca51244.1 37 SFYGIYAVAIGFDIRLYTQHRW-KDGTLMDKLIVCSREGKYTPRKKTesmnnsVENVQRKTNVRAVGCKARIKLKCI-KGILKIDQFVEKHNHELV 130 59*************99998.7888**************99999987677777888999*******9.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-14	37	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-28	252	344	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	532	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.5E-4	545	572	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	7.7E-5	546	567	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MMEIFSGLNE GILCETVEED LKPYVGQEFV SVDEAASFYG IYAVAIGFDI RLYTQHRWKD 60 GTLMDKLIVC SREGKYTPRK KTESMNNSVE NVQRKTNVRA VGCKARIKLK CIKGILKIDQ 120 FVEKHNHELV SVENREFQKL CTCLTDYHKS FIMSNIRLNI GATKTYRMMT EHLNGFQNIG 180 STLNHFKNFQ RDIKCFIHDR DDQLFIDRLK SMEENCPGFF FDYNVDEKGC LRCAIWADRI 240 AIRNYELLGD AVSFDPTYST NKYSMMFTPF TGVDNHKKSV TFCGSLIAKE DFESFNWVFG 300 RFLTAMGGKE PDYIITDQDP SIIKSMSHIF RRSRHRFCTW HIMNKVAVKY GATINDYREF 360 LSKLNLIIWD KEIEEAEFDI RWKEIMNEQG VGEGDWFEDC FSIRKQWVQA HCRDLRMGAL 420 LRTTQRSEST NSFLKKFEHK SGTLVEFWLR FESAMEQQRH SKKKLDNDDQ HSTPKRKTHL 480 KIEEYASKVY THQVFKDVQE EIISSVGNCR CTGYKEDNEE QISSVEDAVR GRVFDIHYHP 540 GTLNVRCSCR LYERLGILCK HIIWIYTSHG VEEIPKMFVS RRWMKDSVCD VGESMKGLCW 600 SGKEEGRQVE MTKLWTEINE TVAFLQSGDL ETVKQMRESL RKFREDHKSS KVKVAKEQEF 660 EKLLGCKVSS EISIMLPKKT KNKGSGKRML STKSVAVAES SKAKRLCNNC KQMAHHFKIN 720 CPNPFIERAS IRSESADEYE E

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MMEIFSGLNE GILCETVEED LKPYVGQEFV SVDEAASFYG IYAVAIGFDI RLYTQHRWKD  60
GTLMDKLIVC SREGKYTPRK KTESMNNSVE NVQRKTNVRA VGCKARIKLK CIKGILKIDQ  120
FVEKHNHELV SVENREFQKL CTCLTDYHKS FIMSNIRLNI GATKTYRMMT EHLNGFQNIG  180
STLNHFKNFQ RDIKCFIHDR DDQLFIDRLK SMEENCPGFF FDYNVDEKGC LRCAIWADRI  240
AIRNYELLGD AVSFDPTYST NKYSMMFTPF TGVDNHKKSV TFCGSLIAKE DFESFNWVFG  300
RFLTAMGGKE PDYIITDQDP SIIKSMSHIF RRSRHRFCTW HIMNKVAVKY GATINDYREF  360
LSKLNLIIWD KEIEEAEFDI RWKEIMNEQG VGEGDWFEDC FSIRKQWVQA HCRDLRMGAL  420
LRTTQRSEST NSFLKKFEHK SGTLVEFWLR FESAMEQQRH SKKKLDNDDQ HSTPKRKTHL  480
KIEEYASKVY THQVFKDVQE EIISSVGNCR CTGYKEDNEE QISSVEDAVR GRVFDIHYHP  540
GTLNVRCSCR LYERLGILCK HIIWIYTSHG VEEIPKMFVS RRWMKDSVCD VGESMKGLCW  600
SGKEEGRQVE MTKLWTEINE TVAFLQSGDL ETVKQMRESL RKFREDHKSS KVKVAKEQEF  660
EKLLGCKVSS EISIMLPKKT KNKGSGKRML STKSVAVAES SKAKRLCNNC KQMAHHFKIN  720
CPNPFIERAS IRSESADEYE E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	478	KRKTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-79	FAR1-related sequence 5