PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51258.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 404aa MW: 45140.9 Da PI: 7.2958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51258.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.6	2.9e-54	26	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelvv+yLk+k+++ +l++ +i+evd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+++++ Dca51258.1 26 LPPGFRFHPTDEELVVHYLKRKAQSLSLPV-AIIAEVDLYKFDPWELPAKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSAGKQK 123 79**************************.88***********7777899**************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ p+g+kt+W+mheyrl Dca51258.1 124 VGVKKALVFYGGKPPRGVKTNWIMHEYRL 152 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-65	20	187	IPR003441	NAC domain
PROSITE profile	PS51005	60.935	26	187	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	27	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MESTNSTAAA ACGSHQPPPQ QPQPHLPPGF RFHPTDEELV VHYLKRKAQS LSLPVAIIAE 60 VDLYKFDPWE LPAKAIFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSAG 120 KQKVGVKKAL VFYGGKPPRG VKTNWIMHEY RLADNKPNNK PPGYDHSHNK KGSLRLDDWV 180 LCRIYKKNNT PRPMDQDRED SMEDIMRMGP ISSLSSLQNS IHNTMGHHHP SLTKTTLNYS 240 SLLEAAHDHH NNNHNQISFF DHGLMSGPHH GMDHLGSAST STVQLKRAMP SAATLYWGAV 300 EHDTTDDSPS KRMSLLHSSN DNDDTNNNNN MDQDNSGRGN NDHVSNDDNN NNDDNNNVNS 360 IASLLNQFPA QTPSSLHQQS MLGGISDGVF RQPYPIPPGL NWYS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MESTNSTAAA ACGSHQPPPQ QPQPHLPPGF RFHPTDEELV VHYLKRKAQS LSLPVAIIAE  60
VDLYKFDPWE LPAKAIFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSAG  120
KQKVGVKKAL VFYGGKPPRG VKTNWIMHEY RLADNKPNNK PPGYDHSHNK KGSLRLDDWV  180
LCRIYKKNNT PRPMDQDRED SMEDIMRMGP ISSLSSLQNS IHNTMGHHHP SLTKTTLNYS  240
SLLEAAHDHH NNNHNQISFF DHGLMSGPHH GMDHLGSAST STVQLKRAMP SAATLYWGAV  300
EHDTTDDSPS KRMSLLHSSN DNDDTNNNNN MDQDNSGRGN NDHVSNDDNN NNDDNNNVNS  360
IASLLNQFPA QTPSSLHQQS MLGGISDGVF RQPYPIPPGL NWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-75	23	190	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-75	23	190	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-75	23	190	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-75	23	190	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-75	23	190	17	171	NAC domain-containing protein 19
3swm_B	3e-75	23	190	17	171	NAC domain-containing protein 19
3swm_C	3e-75	23	190	17	171	NAC domain-containing protein 19
3swm_D	3e-75	23	190	17	171	NAC domain-containing protein 19
3swp_A	3e-75	23	190	17	171	NAC domain-containing protein 19
3swp_B	3e-75	23	190	17	171	NAC domain-containing protein 19
3swp_C	3e-75	23	190	17	171	NAC domain-containing protein 19
3swp_D	3e-75	23	190	17	171	NAC domain-containing protein 19
4dul_A	2e-75	23	190	14	168	NAC domain-containing protein 19
4dul_B	2e-75	23	190	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021758777.1	1e-144	NAC transcription factor 56-like
Swissprot	Q9LD44	1e-106	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2U9IY25	1e-136	A0A2U9IY25_CATRO; NAC domain containing protein 056
STRING	XP_009334622.1	1e-136	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-108	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]