PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51338.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 715aa MW: 83228.1 Da PI: 8.7551

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51338.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.2	4.2e-16	16	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY+ YA +GF+ r+ ++k+ ++g+ +++ vC++eg+ ++kk+ +e +r+++ +r+gC+a++++ + +g+ +++ +++ HnHel+ Dca51338.1 16 KFYKIYAFACGFTARRWSTKRW-DDGSLKSKLVVCNREGFCGSKKKRkteeksSEVVERRSKMHRIGCRARMRLYVK-NGVVRIDVFDEYHNHELV 109 6***********99988777.9999********9988888855554444445588999******999.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-12	16	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-30	232	323	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-4	499	547	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.693	513	549	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0027	524	551	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MPFLGKEFDD VEVGIKFYKI YAFACGFTAR RWSTKRWDDG SLKSKLVVCN REGFCGSKKK 60 RKTEEKSSEV VERRSKMHRI GCRARMRLYV KNGVVRIDVF DEYHNHELVS PENRQFHKMA 120 RHLTKYHKKL ILSNSRLNIG ATKSYRMYKE LVDGYENVGA SLNDFKNFQR DVKCFIHDRD 180 GQLFVDHLVS LKETRPGFYF DYDVDAKGCL RRVIWADNYA RKSYALFGDT LAYDPTYSTN 240 KYSMVFTPFT GVDNHKKSIT FCGALIAKED YESFVWVFTR FLIAMDGKEP SYIITDQDPG 300 IIKAVNEVFK EARHRFCMWH IMNKVPSKFG VTRADYQTFL KRLNAIIWDK EISADDFDVE 360 WDEIMVNHGV GAGDWFNEAF EIRSQWVMAH CKQLRMGGVM RTTQRCESSN NFFKRFESKN 420 GTLVEFWMRY ESAMEQQRHN HKRLDYVNSQ GVPQLLGCFD LEKDAAEQFT QVIFEEFQEE 480 LRFSMSSCIC KGYRDDGTYE VTMVKDSVRD RVFEVRYDSV TKDADCSCGL YYQKGVICRH 540 VIWILSCHGL KKLPDGLVAG RWRKNAVKII DEMEFVDGSN ADGKFVEMSK LWEEFQETLG 600 VVRALDREKI LQLTGLIREF RESNSSATQV VESKENEIED LLGVKLRSDV LVLPPKQSKN 660 KGSGKRLLSN KTKAVDLAKK AKRLCRNCKQ MAHHDKRNCP NPFVESREDV VEATS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MPFLGKEFDD VEVGIKFYKI YAFACGFTAR RWSTKRWDDG SLKSKLVVCN REGFCGSKKK  60
RKTEEKSSEV VERRSKMHRI GCRARMRLYV KNGVVRIDVF DEYHNHELVS PENRQFHKMA  120
RHLTKYHKKL ILSNSRLNIG ATKSYRMYKE LVDGYENVGA SLNDFKNFQR DVKCFIHDRD  180
GQLFVDHLVS LKETRPGFYF DYDVDAKGCL RRVIWADNYA RKSYALFGDT LAYDPTYSTN  240
KYSMVFTPFT GVDNHKKSIT FCGALIAKED YESFVWVFTR FLIAMDGKEP SYIITDQDPG  300
IIKAVNEVFK EARHRFCMWH IMNKVPSKFG VTRADYQTFL KRLNAIIWDK EISADDFDVE  360
WDEIMVNHGV GAGDWFNEAF EIRSQWVMAH CKQLRMGGVM RTTQRCESSN NFFKRFESKN  420
GTLVEFWMRY ESAMEQQRHN HKRLDYVNSQ GVPQLLGCFD LEKDAAEQFT QVIFEEFQEE  480
LRFSMSSCIC KGYRDDGTYE VTMVKDSVRD RVFEVRYDSV TKDADCSCGL YYQKGVICRH  540
VIWILSCHGL KKLPDGLVAG RWRKNAVKII DEMEFVDGSN ADGKFVEMSK LWEEFQETLG  600
VVRALDREKI LQLTGLIREF RESNSSATQV VESKENEIED LLGVKLRSDV LVLPPKQSKN  660
KGSGKRLLSN KTKAVDLAKK AKRLCRNCKQ MAHHDKRNCP NPFVESREDV VEATS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-74	FAR1-related sequence 5